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BaseInfo

ncRNA ID novel_zma_miR9225
Species Zea mays
Class miRNA
Genome position Chr4:230852516-230852721 [-]
Reference genome RefGen_v4
Source SRR1583942;SRR1583941
Length 24
Mature sequence(if miRNA) 183 - AAAUAUGUAUUUACAUGCAAAAGU - 206
Stem-loop(if miRNA) --             CA           A    C       UCU   A    --     G     CA        C     --A      AG           CCC
  AAAUAUGUAUUUA  UGCAAAAGUUG GAUG AAACUUG   UUA AAAG  UCAUA GAAAA  ACAAAUUU AGGUG   AUGUAC  UAAAAGACAAU   U
  |||||||||||||  ||||||||||| |||| |||||||   ||| ||||  ||||| |||||  |||||||| |||||   ||||||  |||||||||||   G
  UUUAUAUAUGAGU  ACGUUUUCAAC CUAU UUUGAGU   GAU UUUC  AGUAU UUUUU  UGUUUAAA UUUAC   UACGUG  AUUUUCUGUUG   A
UG             AC           C    U       -UU   C    AA     G     AC        A     GUG      --           UAG
Stem-loop sequence AAAUAUGUAUUUACAUGCAAAAGUUGAGAUGCAAACUUGUCUUUAAAAAGUCAUAGGAAAACAACAAAUUUCAGGUGAAUGUACAGUAAAAGACAAUCCCUGAGAUGUUGUCUUUUAGUGCAUGUGCAUUUAAAAUUUGUCAUUUUUGUAUGAAACUUUCUAGUUUGAGUUUUUAUCCCAACUUUUGCACAUGAGUAUAUAUUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU959963.1
ncRNA:24   UGAAAACGUACAUUUAUGUAUAAA   1
  ==**|||||||||||||||*||||
targets:1517   GUCCUUGCAUGUAAAUACACAUUU   1540

1.5 Zea mays clone 220866 beta-expansin 4 precursor, mRNA, complete cds NA coding protein psRNATarget
NM_001155097.1
ncRNA:24   UGAAAACGUACAUUUAUGUAUAAA   1
  ==**|||||||||||||||*||||
targets:1517   GUCCUUGCAUGUAAAUACACAUUU   1540

1.5 Zea mays beta-expansin 4 (LOC100282185), mRNA NA coding protein psRNATarget
BT069901.1
ncRNA:24   UGAAAACGUACAUUUAUGUAUAAA   1
  ==**|||||||||||||||*||||
targets:830   GUCCUUGCAUGUAAAUACACAUUU   853

1.5 Zea mays full-length cDNA clone ZM_BFb0317E08 mRNA, complete cds NA coding protein psRNATarget
EU946106.1
ncRNA:24   UGAAAACGUACAUUUAUGUAUAAA   1
  ==**|||||||||||||||*||||
targets:627   GUCCUUGCAUGUAAAUACACAUUU   650

1.5 Zea mays clone 296917 mRNA sequence NA coding protein psRNATarget
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