Search result

BaseInfo

ncRNA ID	novel_zma_miR9219
Species	Zea mays
Class	miRNA
Genome position	Chr3:181798030-181798083 [+]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	1 - CUACAGGCGCGGACUGUCCGGACC - 24
Stem-loop(if miRNA)	--    A  -       U     GA  A   CUAC GG CGCGGAC GUCCG  CC G   |||| || ||||||| |||||  ||   GAUG CU GCGCCUG CAGGC  GG G AA    G  A       C     -G  C
Stem-loop sequence	CUACAGGCGCGGACUGUCCGGACCAGGCGGGCGGACCGUCCGCGAUCGGUAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949855.1	ncRNA:24   CCAGGCCUGUCAGGCGCGGACAUC   1   ||||||||||||||||||||||=| targets:408   GGUCCGGACAGUCCGCGCCUGUGG   431 Target Full Sequence	1.5	Zea mays clone 449025 mRNA sequence	NA	coding protein	psRNATarget
EU955374.1	ncRNA:24   CCAGGCCUGUCAGGCGCGGACAUC   1   ||||||||||||||||||||||=| targets:1917   GGUCCGGACAGUCCGCGCCUGUGG   1940 Target Full Sequence	1.5	Zea mays clone 1529849 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149438.1	ncRNA:24   CCAGGCCUGUCAGGCGCGGACAUC   1   ||||||||||||||||||||||=| targets:1917   GGUCCGGACAGUCCGCGCCUGUGG   1940 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275341 (LOC100275341), mRNA	NA	coding protein	psRNATarget
XM_008658262.2	ncRNA:24   CCAGGCCUGUCAGGCGCGGACAUC   1   ||||||||||||||||||||||=| targets:2665   GGUCCGGACAGUCCGCGCCUGUGG   2688 Target Full Sequence	1.5	PREDICTED: Zea mays CASC3/Barentsz eIF4AIII binding (LOC103635880), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658263.2	ncRNA:24   CCAGGCCUGUCAGGCGCGGACAUC   1   ||||||||||||||||||||||=| targets:2766   GGUCCGGACAGUCCGCGCCUGUGG   2789 Target Full Sequence	1.5	PREDICTED: Zea mays CASC3/Barentsz eIF4AIII binding (LOC103635880), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU974386.1	ncRNA:24   CCAGGCCUGUCAGGCGCGGACAUC   1   |||||||||=||||||||||||=| targets:842   GGUCCGGACGGUCCGCGCCUGUGG   865 Target Full Sequence	2.5	Zea mays clone 447822 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062568.1	ncRNA:24   CCAGGCCUGUCAGGCGCGGACAUC   1   |||||||||=||||||||||||=| targets:1433   GGUCCGGACGGUCCGCGCCUGUGG   1456 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0315C08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174686.1	ncRNA:24   CCAGGCCUGUCAGGCGCGGACAUC   1   |||||||||=||||||||||||=| targets:1433   GGUCCGGACGGUCCGCGCCUGUGG   1456 Target Full Sequence	2.5	Zea mays Cysteine-rich receptor-like protein kinase 10 (LOC100381909), mRNA	NA	coding protein	psRNATarget
BT018646.1	ncRNA:24   CCAGGCCUGUCAGGCGCGGACAUC   1   |||||||||=||||||||||||=| targets:1568   GGUCCGGACGGUCCGCGCCUGUGG   1591 Target Full Sequence	2.5	Zea mays clone EL01N0505C04.d mRNA sequence	NA	coding protein	psRNATarget