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BaseInfo

ncRNA ID novel_zma_miR9218
Species Zea mays
Class miRNA
Genome position Chr3:16219610-16219770 [+]
Reference genome RefGen_v4
Source SRR4237222
Length 20
Mature sequence(if miRNA) 142 - GUGCAGACCGCACCGGACCC - 161
Stem-loop(if miRNA) ---G           A     C   A           AU        G      C                         A
    UCGGUGCGGUC GCGCA CUG UCGGGGCUUCC  UAGUUAGA AGAGCC AGGGCUCUAAAUACUAUAUAUAUAU U
    ||||||||||| ||||| ||| |||||||||||  |||||||| |||||| |||||||||||||||||||||||||
    GGCCACGCCAG CGUGU GAC AGCCCCGAAGG  AUCAAUUU UCUCGG UUCCGAGAUUUAUGAUAUAUAUAUA A
CCCA           A     A   C           AU        A      A                         U
Stem-loop sequence GUCGGUGCGGUCAGCGCACCUGAUCGGGGCUUCCAUUAGUUAGAGAGAGCCCAGGGCUCUAAAUACUAUAUAUAUAUAUAUAUAUAUAUAUAGUAUUUAGAGCCUUAGGCUCUAUUUAACUAUAGGAAGCCCCGACCAGAUGUGCAGACCGCACCGGACCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT067435.1
ncRNA:20   CCCAGGCCACGCCAGACGUG   1
  *||||*|||*||||||||||
targets:1535   AGGUCAGGUCCGGUCUGCAC   1554

2.5 Zea mays full-length cDNA clone ZM_BFc0043G15 mRNA, complete cds NA coding protein psRNATarget