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BaseInfo

ncRNA ID	novel_zma_miR9209
Species	Zea mays
Class	miRNA
Genome position	Chr2:83928312-83928437 [+]
Reference genome	RefGen_v4
Source	SRR4237222
Length	21
Mature sequence(if miRNA)	106 - UUGGUGUAACCGAACAAGCCU - 126
Stem-loop(if miRNA)	--  AC    A                 G             A      C  CU        A   GC  GUUC GUUACACCAAUCUAGAG GGGAUUGGAGGGG UUAAAU CC  CCUAGUCA A   ||  |||| ||||||||||||||||| ||||||||||||| |||||| ||  ||||||||   CG  CAAG CAAUGUGGUUAGGUCUC CCCUAACCUCCUC AAUUUA GG  GGAUCAGU A UC  AA    C                 A             A      A  UC        A
Stem-loop sequence	GCACGUUCAGUUACACCAAUCUAGAGGGGGAUUGGAGGGGAUUAAAUCCCCUCCUAGUCAAAAAUGACUAGGCUGGAAUUUAAACUCCUCCAAUCCCACUCUGGAUUGGUGUAACCGAACAAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ095217.1	ncRNA:21   UCCGAACAAGCCAAUGUGGUU   1   =|||||||||||||||||||| targets:36   GGGCUUGUUCGGUUACACCAA   56 Target Full Sequence	0.0	TSA: Zea mays contig30870, mRNA sequence	NA	coding protein	psRNATarget
XM_008656925.2	ncRNA:21   UCCGAACAAGCCAAUGUGGUU   1   =|||||||||||||||||||| targets:20   GGGCUUGUUCGGUUACACCAA   40 Target Full Sequence	0.0	PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100304325), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542872.1	ncRNA:21   UCCGAACAAGCCAAUGUGGUU   1   =|||||||||||||||||||| targets:1267   GGGCUUGUUCGGUUACACCAA   1287 Target Full Sequence	0.0	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (LOC103634808), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:21   UCCGAACAAGCCAAUGUGGUU   1   =||||||||||||||||=||| targets:444   GGGCUUGUUCGGUUACAUCAA   464 Target Full Sequence	1.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:21   UCCGAACAAGCCAAUGUGGUU   1   =||||||||||||||||=||| targets:444   GGGCUUGUUCGGUUACAUCAA   464 Target Full Sequence	1.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
HI406796.1	ncRNA:21   UCCGAACAAGCCAAUGUGGUU   1   =|||*|||||||||||||||| targets:12   GGGCAUGUUCGGUUACACCAA   32 Target Full Sequence	1.0	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:21   UCCGAACAAGCCAAUGUGGUU   1   =|||*|||||||||||||||| targets:12   GGGCAUGUUCGGUUACACCAA   32 Target Full Sequence	1.0	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:21   UCCGAACAAGCCAAUGUGGUU   1   =|||*|||||||||||||||| targets:12   GGGCAUGUUCGGUUACACCAA   32 Target Full Sequence	1.0	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
BT041883.1	ncRNA:21   UCCGAACAAGCCAAUGUGGUU   1   =||||||||||||||||*||| targets:785   GGGCUUGUUCGGUUACAACAA   805 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0073E14 mRNA, complete cds	NA	coding protein	psRNATarget
BT062257.1	ncRNA:21   UCCGAACAAGCCAAUGUGGUU   1   =||||||||||||||||*||| targets:1084   GGGCUUGUUCGGUUACAACAA   1104 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0234J14 mRNA, complete cds	NA	coding protein	psRNATarget
EU975659.1	ncRNA:21   UCCGAACAAGCCAAUGUGGUU   1   =||||||||||||||||*||| targets:2113   GGGCUUGUUCGGUUACAACAA   2133 Target Full Sequence	1.5	Zea mays clone 495563 ankyrin protein kinase-like mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158998.2	ncRNA:21   UCCGAACAAGCCAAUGUGGUU   1   =||||||||||||||||*||| targets:2114   GGGCUUGUUCGGUUACAACAA   2134 Target Full Sequence	1.5	Zea mays Ankyrin protein kinase-like (LOC100279910), mRNA	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:19   CGAACAAGCCAAUGUGGUU   1   |||||||||*||||||||| targets:1   GCUUGUUCGUUUACACCAA   19 Target Full Sequence	1.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
JB163489.1	ncRNA:19   CGAACAAGCCAAUGUGGUU   1   |||||||||*||||||||| targets:1   GCUUGUUCGUUUACACCAA   19 Target Full Sequence	1.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
HI403028.1	ncRNA:19   CGAACAAGCCAAUGUGGUU   1   |||||||||*||||||||| targets:1   GCUUGUUCGUUUACACCAA   19 Target Full Sequence	1.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
DQ245794.1	ncRNA:21   UCCGAACAAGCCAAUGUGGUU   1   **|||||*|||||||||=||| targets:363   UUGCUUGCUCGGUUACAUCAA   383 Target Full Sequence	2.5	Zea mays clone 20374 mRNA sequence	NA	coding protein	psRNATarget