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BaseInfo

ncRNA ID	novel_zma_miR9205
Species	Zea mays
Class	miRNA
Genome position	Chr2:55524750-55524864 [+]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	92 - CUGGCACUCGGCAAAGAACCUGAC - 115
Stem-loop(if miRNA)	--CU   CA                 A    A                 ACGAC         GGU  CUUUGCCGAGUGUCAGG CCAU GCACUCGGCAAAGAACC     UUGGG     |||  ||||||||||||||||| |||| |||||||||||||||||     ||||C     CCA  GAAACGGCUCACGGUCC GGUG UGUGAGCCGUUUCUUGG     AGCCA CAGU   -A                 C    A                 -AUAU
Stem-loop sequence	CUGGUCACUUUGCCGAGUGUCAGGACCAUAGCACUCGGCAAAGAACCACGACUUGGGCACCGAUAUAGGUUCUUUGCCGAGUGUAGUGGCCCUGGCACUCGGCAAAGAACCUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170246.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ||*||||||||||||||||||=|* targets:76   GUGAGGUUCUUUGCCGAGUGCUAC   99 Target Full Sequence	2.5	Sequence 7910 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241915.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ||*||||||||||||||||||=|* targets:76   GUGAGGUUCUUUGCCGAGUGCUAC   99 Target Full Sequence	2.5	Sequence 7910 from Patent EP2985353	NA	coding protein	psRNATarget
HI409785.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ||*||||||||||||||||||=|* targets:76   GUGAGGUUCUUUGCCGAGUGCUAC   99 Target Full Sequence	2.5	Sequence 7910 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239157.1	ncRNA:24   CAGU-CCAAGAAACGGCUCACGGUC   1   |||*-|||||||||||||||||=|* targets:48   GUCUUGGUUCUUUGCCGAGUGCUAU   72 Target Full Sequence	2.5	Sequence 5152 from Patent EP2985353	NA	coding protein	psRNATarget
HI407027.1	ncRNA:24   CAGU-CCAAGAAACGGCUCACGGUC   1   |||*-|||||||||||||||||=|* targets:48   GUCUUGGUUCUUUGCCGAGUGCUAU   72 Target Full Sequence	2.5	Sequence 5152 from Patent EP2074227	NA	coding protein	psRNATarget
JB167488.1	ncRNA:24   CAGU-CCAAGAAACGGCUCACGGUC   1   |||*-|||||||||||||||||=|* targets:48   GUCUUGGUUCUUUGCCGAGUGCUAU   72 Target Full Sequence	2.5	Sequence 5152 from Patent EP2559767	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   CAGUCC-AAGAAACGGCUCACGGUC   1   ***|||-|||||||||||||||||* targets:1095   AAGAGGCUUCUUUGCCGAGUGCCAA   1119 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   **=|**||||||||||||||||*| targets:2158   AAUAACUUCUUUGCCGAGUGCCCG   2181 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   **=|**||||||||||||||||*| targets:2158   AAUAACUUCUUUGCCGAGUGCCCG   2181 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
JB167100.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ||--|*|||||||||||||||||* targets:165   GU--GCUUCUUUGCCGAGUGCCAU   186 Target Full Sequence	2.0	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ||--|*|||||||||||||||||* targets:165   GU--GCUUCUUUGCCGAGUGCCAU   186 Target Full Sequence	2.0	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
HI406639.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ||--|*|||||||||||||||||* targets:165   GU--GCUUCUUUGCCGAGUGCCAU   186 Target Full Sequence	2.0	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
JB170157.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ***||**||||||||||||||||| targets:37   AGAAGCCUCUUUGCCGAGUGCCAG   60 Target Full Sequence	2.0	Sequence 7821 from Patent EP2559767	NA	coding protein	psRNATarget
HI409696.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ***||**||||||||||||||||| targets:37   AGAAGCCUCUUUGCCGAGUGCCAG   60 Target Full Sequence	2.0	Sequence 7821 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241826.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ***||**||||||||||||||||| targets:37   AGAAGCCUCUUUGCCGAGUGCCAG   60 Target Full Sequence	2.0	Sequence 7821 from Patent EP2985353	NA	coding protein	psRNATarget
EU957132.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   |*|=*|||=||||||*|||||||| targets:1859   GGCGUGUUUUUUGCCAAGUGCCAG   1882 Target Full Sequence	2.5	Zea mays clone 1583769 mRNA sequence	NA	coding protein	psRNATarget