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BaseInfo

ncRNA ID	novel_zma_miR9202
Species	Zea mays
Class	miRNA
Genome position	Chr2:11979825-11979922 [-]
Reference genome	RefGen_v4
Source	SRR4237222;SRR5100248;SRR5100255
Length	24
Mature sequence(if miRNA)	75 - UUGACACUCGGCAAAGAACUUCUU - 98
Stem-loop(if miRNA)	--UUGA              C       C        UU --UUUU   G       CACUCGGCAAAGAA UUCUUUG CGAGUGUU  C      ACU G       |||||||||||||| ||||||| ||||||||  |      |||       GUGAGCCGUUUCUU GAGAAAC GCUCACAG  G      UGA A CAAUCC              C       A        UU UUUUUU   G
Stem-loop sequence	UUGACACUCGGCAAAGAACUUCUUUGCCGAGUGUUUUCUUUUACUGGAGAGUUUUUUUGUUGACACUCGACAAAGAGCUUCUUUGCCGAGUGCCUAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001165647.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAGUU   1   |||||*||||||||=||||||||| targets:40   AAGAAAUUCUUUGCUGAGUGUCAA   63 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAGUU   1   |||||*||||||||=||||||||| targets:40   AAGAAAUUCUUUGCUGAGUGUCAA   63 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAGUU   1   |||||*||||||||=||||||||| targets:2059   AAGAAAUUCUUUGCUGAGUGUCAA   2082 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAGUU   1   |||||*||||||||=||||||||| targets:2059   AAGAAAUUCUUUGCUGAGUGUCAA   2082 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAGUU   1   ||||-|*||||||||||||||||| targets:63   AAGA-GCUCUUUGCCGAGUGUCAA   85 Target Full Sequence	1.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAGUU   1   ||||-|*||||||||||||||||| targets:63   AAGA-GCUCUUUGCCGAGUGUCAA   85 Target Full Sequence	1.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAGUU   1   ||||-|*||||||||||||||||| targets:63   AAGA-GCUCUUUGCCGAGUGUCAA   85 Target Full Sequence	1.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
BT042352.1	ncRNA:24   UUCU---UCAAGAAACGGCUCACAGUU   1   ||*|---||*||||||||||||||||* targets:1196   AAAAUUUAGCUCUUUGCCGAGUGUCAU   1222 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:24   UUCU---UCAAGAAACGGCUCACAGUU   1   ||*|---||*||||||||||||||||* targets:1246   AAAAUUUAGCUCUUUGCCGAGUGUCAU   1272 Target Full Sequence	2.0	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget
JB169026.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAGUU   1   ***|=||||||||||||||||=|* targets:1   CUUAGGUUCUUUGCCGAGUGUUAU   24 Target Full Sequence	2.5	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
HI408565.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAGUU   1   ***|=||||||||||||||||=|* targets:1   CUUAGGUUCUUUGCCGAGUGUUAU   24 Target Full Sequence	2.5	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAGUU   1   ***|=||||||||||||||||=|* targets:1   CUUAGGUUCUUUGCCGAGUGUUAU   24 Target Full Sequence	2.5	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
JB166664.1	ncRNA:24   UUCU--UCAAGAAACGGCUCACAGUU   1   ||||--|*|*|||||||||||||||* targets:44   AAGAUAACUCCUUUGCCGAGUGUCAC   69 Target Full Sequence	3.0	Sequence 4328 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238333.1	ncRNA:24   UUCU--UCAAGAAACGGCUCACAGUU   1   ||||--|*|*|||||||||||||||* targets:44   AAGAUAACUCCUUUGCCGAGUGUCAC   69 Target Full Sequence	3.0	Sequence 4328 from Patent EP2985353	NA	coding protein	psRNATarget
HI406203.1	ncRNA:24   UUCU--UCAAGAAACGGCUCACAGUU   1   ||||--|*|*|||||||||||||||* targets:44   AAGAUAACUCCUUUGCCGAGUGUCAC   69 Target Full Sequence	3.0	Sequence 4328 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238622.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAGUU   1   |||*-||*||*||||||||||||= targets:22   AAGC-GUACUGUGCCGAGUGUCAG   44 Target Full Sequence	3.0	Sequence 4617 from Patent EP2985353	NA	coding protein	psRNATarget
JB166953.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAGUU   1   |||*-||*||*||||||||||||= targets:22   AAGC-GUACUGUGCCGAGUGUCAG   44 Target Full Sequence	3.0	Sequence 4617 from Patent EP2559767	NA	coding protein	psRNATarget
HI406492.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAGUU   1   |||*-||*||*||||||||||||= targets:22   AAGC-GUACUGUGCCGAGUGUCAG   44 Target Full Sequence	3.0	Sequence 4617 from Patent EP2074227	NA	coding protein	psRNATarget