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BaseInfo

ncRNA ID	novel_zma_miR9199
Species	Zea mays
Class	miRNA
Genome position	Chr2:16394828-16394960 [-]
Reference genome	RefGen_v4
Source	SRR4237222
Length	23
Mature sequence(if miRNA)	1 - AUUGGGGUAGAACCGAACAAGCU - 23
Stem-loop(if miRNA)	--           -AU                   GA         CACGGAUUGAA   AA      -   G   UUUGUUCGGUU   UUUUAAUCCAUAUGGAUUG  GGGGAUUGA           GGG  UUUUGA CUU C   |||||||||||   |||||||||||||||||||  |||||||||           |||  |||||| |||   GAACAAGCCAA   GGGGUUAGGUAUACCUAAC  CCCCUAACU           CCC  AAAAUU GGG U UC           GAU                   UA         -----------   CC      A   A
Stem-loop sequence	UUUGUUCGGUUAUUUUUAAUCCAUAUGGAUUGGAGGGGAUUGACACGGAUUGAAGGGAAUUUUGACUUGCUAGGGAUUAAAACCCCCUCAAUCCCCAUCAAUCCAUAUGGAUUGGGGUAGAACCGAACAAGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ061352.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:108   GGCUUGUUCGGUUCUACCCCAAU   130 Target Full Sequence	0.0	TSA: Zea mays contig62474, mRNA sequence	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:355   GGCUUGUUCGGUUCUACCCCAAU   377 Target Full Sequence	0.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:694   GGCUUGUUCGGUUCUACCCCAAU   716 Target Full Sequence	0.0	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062922.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:836   GGCUUGUUCGGUUCUACCCCAAU   858 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959053.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:782   GGCUUGUUCGGUUCUACCCCAAU   804 Target Full Sequence	0.0	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:782   GGCUUGUUCGGUUCUACCCCAAU   804 Target Full Sequence	0.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:783   GGCUUGUUCGGUUCUACCCCAAU   805 Target Full Sequence	0.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU953075.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:919   GGCUUGUUCGGUUCUACCCCAAU   941 Target Full Sequence	0.0	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
EU961636.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:1039   GGCUUGUUCGGUUCUACCCCAAU   1061 Target Full Sequence	0.0	Zea mays clone 237217 mRNA sequence	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:855   GGCUUGUUCGGUUCUACCCCAAU   877 Target Full Sequence	0.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
XM_008672211.2	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:881   GGCUUGUUCGGUUCUACCCCAAU   903 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:1900   GGCUUGUUCGGUUCUACCCCAAU   1922 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:1900   GGCUUGUUCGGUUCUACCCCAAU   1922 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_008672210.2	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:1673   GGCUUGUUCGGUUCUACCCCAAU   1695 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||||||| targets:887   GGCUUGUUCGGUUCUACCCCAAU   909 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT064935.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =||||||||||||||||=||||| targets:748   GGCUUGUUCGGUUCUACUCCAAU   770 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
EU959055.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =||||||||||||*||||||||| targets:784   GGCUUGUUCGGUUYUACCCCAAU   806 Target Full Sequence	1.5	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
EU965203.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =||||||||||||||||||||=| targets:799   GGCUUGUUCGGUUCUACCCCAGU   821 Target Full Sequence	1.5	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =||||||||||||||||||||=| targets:799   GGCUUGUUCGGUUCUACCCCAGU   821 Target Full Sequence	1.5	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||||||||||=|||| targets:1540   GGCUUGUUCGGUUCUACCUCAAU   1562 Target Full Sequence	1.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
HI406643.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   ||||||||||*|||||||||||| targets:8   AGCUUGUUCGUUUCUACCCCAAU   30 Target Full Sequence	1.5	Sequence 4768 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238773.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   ||||||||||*|||||||||||| targets:8   AGCUUGUUCGUUUCUACCCCAAU   30 Target Full Sequence	1.5	Sequence 4768 from Patent EP2985353	NA	coding protein	psRNATarget
JB167104.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   ||||||||||*|||||||||||| targets:8   AGCUUGUUCGUUUCUACCCCAAU   30 Target Full Sequence	1.5	Sequence 4768 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020549355.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||*|||||||||||| targets:849   GGCUUGUUCGAUUCUACCCCAAU   871 Target Full Sequence	1.5	PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA	NA	coding protein	psRNATarget
BT064472.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =||||||||||||*||||||||| targets:1341   GGCUUGUUCGGUUAUACCCCAAU   1363 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =||||||||||||*||||||||| targets:1385   GGCUUGUUCGGUUAUACCCCAAU   1407 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =||||||||||||*||||||||| targets:1403   GGCUUGUUCGGUUAUACCCCAAU   1425 Target Full Sequence	1.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =||||||||||||*||||||||| targets:1417   GGCUUGUUCGGUUAUACCCCAAU   1439 Target Full Sequence	1.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =||||||||||||*||||||||| targets:1417   GGCUUGUUCGGUUAUACCCCAAU   1439 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =||||||||||||*||||||||| targets:1608   GGCUUGUUCGGUUAUACCCCAAU   1630 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   =|||||||||*|||||||||||| targets:3030   GGCUUGUUCGUUUCUACCCCAAU   3052 Target Full Sequence	1.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
XM_020548481.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   *|=||||||||||||*||||||* targets:1276   CGUUUGUUCGGUUCUUCCCCAAA   1298 Target Full Sequence	2.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020548480.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   *|=||||||||||||*||||||* targets:1306   CGUUUGUUCGGUUCUUCCCCAAA   1328 Target Full Sequence	2.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020548478.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   *|=||||||||||||*||||||* targets:1370   CGUUUGUUCGGUUCUUCCCCAAA   1392 Target Full Sequence	2.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020548482.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   *|=||||||||||||*||||||* targets:1380   CGUUUGUUCGGUUCUUCCCCAAA   1402 Target Full Sequence	2.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020548476.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   *|=||||||||||||*||||||* targets:1383   CGUUUGUUCGGUUCUUCCCCAAA   1405 Target Full Sequence	2.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020548479.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   *|=||||||||||||*||||||* targets:1390   CGUUUGUUCGGUUCUUCCCCAAA   1412 Target Full Sequence	2.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020548475.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   *|=||||||||||||*||||||* targets:1400   CGUUUGUUCGGUUCUUCCCCAAA   1422 Target Full Sequence	2.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548477.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   *|=||||||||||||*||||||* targets:1441   CGUUUGUUCGGUUCUUCCCCAAA   1463 Target Full Sequence	2.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020548474.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   *|=||||||||||||*||||||* targets:1477   CGUUUGUUCGGUUCUUCCCCAAA   1499 Target Full Sequence	2.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU956672.1	ncRNA:23   UCGAACAAGCCAAGAUGGGGUUA   1   *|=||||||||||||*||||||* targets:1684   CGUUUGUUCGGUUCUUCCCCAAA   1706 Target Full Sequence	2.5	Zea mays clone 1570344 mRNA sequence	NA	coding protein	psRNATarget