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BaseInfo

ncRNA ID novel_zma_miR9198
Species Zea mays
Class miRNA
Genome position Chr2:35312902-35313027 [-]
Reference genome RefGen_v4
Source SRR4237222;SRR5099742
Length 24
Mature sequence(if miRNA) 103 - UAGGGCUGAUUUGGUGACCGGGGA - 126
Stem-loop(if miRNA) ---U                CC         G      AGA   CCUCUUGCUAUUUAAAAUUGA
    AGGGCUGAUUUGGUGA  GGGGAUCCC AGGGGA   AAU                     A
    ||||||||||||||||  ||||||||| ||||||   |||
    UCCCGAUUAAACCACU  UCCCUAGGG UCCCCU   AGG                     U
GAAU                AA         A      ---   UACCCCUCCUUAGGGGAGCGU
Stem-loop sequence UAGGGCUGAUUUGGUGACCGGGGAUCCCGAGGGGAAGAAAUCCUCUUGCUAUUUAAAAUUGAAUUGCGAGGGGAUUCCUCCCCAUGGAUCCCCUAGGGAUCCCUAAUCACCAAAUUAGCCCUUAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008671854.2
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||||||||||||||||||||||
targets:71   UCCCCGGUCACCAAAUCAGCCCUA   94

0.0 PREDICTED: Zea mays alpha-glucosidase 2 (LOC103647311), transcript variant X2, mRNA NA coding protein psRNATarget
LQ235431.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||||||||||||||||
targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120

0.0 Sequence 1426 from Patent EP2985353 NA coding protein psRNATarget
JB163762.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||||||||||||||||
targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120

0.0 Sequence 1426 from Patent EP2559767 NA coding protein psRNATarget
HI403301.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||||||||||||||||
targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120

0.0 Sequence 1426 from Patent EP2074227 NA coding protein psRNATarget
EU967725.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||||||||||||||||||=|||
targets:1133   UCCCCGGUCACCAAAUCAGCUCUA   1156

1.5 Zea mays clone 305590 mRNA sequence NA coding protein psRNATarget
LQ235485.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||||||||||||=|||
targets:61   UCCCUGGUCACCAAAUCAGCUCUA   84

1.5 Sequence 1480 from Patent EP2985353 NA coding protein psRNATarget
HI403355.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||||||||||||=|||
targets:61   UCCCUGGUCACCAAAUCAGCUCUA   84

1.5 Sequence 1480 from Patent EP2074227 NA coding protein psRNATarget
JB163816.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||||||||||||=|||
targets:61   UCCCUGGUCACCAAAUCAGCUCUA   84

1.5 Sequence 1480 from Patent EP2559767 NA coding protein psRNATarget
HI403235.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||||||||||||=|||
targets:96   UCCCUGGUCACCAAAUCAGCUCUA   119

1.5 Sequence 1360 from Patent EP2074227 NA coding protein psRNATarget
HI403402.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||||||||||||=|||
targets:96   UCCCUGGUCACCAAAUCAGCUCUA   119

1.5 Sequence 1527 from Patent EP2074227 NA coding protein psRNATarget
LQ235365.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||||||||||||=|||
targets:96   UCCCUGGUCACCAAAUCAGCUCUA   119

1.5 Sequence 1360 from Patent EP2985353 NA coding protein psRNATarget
LQ235532.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||||||||||||=|||
targets:96   UCCCUGGUCACCAAAUCAGCUCUA   119

1.5 Sequence 1527 from Patent EP2985353 NA coding protein psRNATarget
JB163696.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||||||||||||=|||
targets:96   UCCCUGGUCACCAAAUCAGCUCUA   119

1.5 Sequence 1360 from Patent EP2559767 NA coding protein psRNATarget
JB163863.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||||||||||||=|||
targets:96   UCCCUGGUCACCAAAUCAGCUCUA   119

1.5 Sequence 1527 from Patent EP2559767 NA coding protein psRNATarget
LQ235575.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=||||||||||||||||||*
targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85

1.0 Sequence 1570 from Patent EP2985353 NA coding protein psRNATarget
JB163906.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=||||||||||||||||||*
targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85

1.0 Sequence 1570 from Patent EP2559767 NA coding protein psRNATarget
HI403445.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=||||||||||||||||||*
targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85

1.0 Sequence 1570 from Patent EP2074227 NA coding protein psRNATarget
EZ056613.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |||||||||||||||||||=|||*
targets:160   UCCCCGGUCACCAAAUCAGUCCUU   183

2.5 TSA: Zea mays contig57735, mRNA sequence NA coding protein psRNATarget
NM_001196706.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |||||||||||||||||||=|||*
targets:867   UCCCCGGUCACCAAAUCAGUCCUU   890

2.5 Zea mays hypothetical protein (LOC100502229), mRNA NA coding protein psRNATarget
BT087480.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |||||||||||||||||||=|||*
targets:867   UCCCCGGUCACCAAAUCAGUCCUU   890

2.5 Zea mays full-length cDNA clone ZM_BFb0089I03 mRNA, complete cds NA coding protein psRNATarget
NM_001143476.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||||||||||||||=||||||*
targets:54   UCCCCGGUCACCAAAUUAGCCCUC   77

2.5 Zea mays hypothetical protein (LOC100217107), mRNA NA coding protein psRNATarget
BT037942.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||||||||||||||=||||||*
targets:54   UCCCCGGUCACCAAAUUAGCCCUC   77

2.5 Zea mays full-length cDNA clone ZM_BFb0203O02 mRNA, complete cds NA coding protein psRNATarget
BT084817.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||||||||||||||=||||||*
targets:148   UCCCCGGUCACCAAAUUAGCCCUC   171

2.5 Zea mays full-length cDNA clone ZM_BFb0186I10 mRNA, complete cds NA coding protein psRNATarget
EU950017.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||*|||||||||||||||||||
targets:513   UCCCGGGUCACCAAAUCAGCCCUA   536

0.0 Zea mays clone 457681 mRNA sequence NA coding protein psRNATarget
NM_001352049.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||=|||||||||=|||
targets:580   UCCCUGGUCAUCAAAUCAGCUCUA   603

2.5 Zea mays uncharacterized LOC100284194 (pco105859), transcript variant 2, mRNA NA coding protein psRNATarget
XM_020547779.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||=|||||||||=|||
targets:608   UCCCUGGUCAUCAAAUCAGCUCUA   631

2.5 PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547780.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||=|||||||||=|||
targets:610   UCCCUGGUCAUCAAAUCAGCUCUA   633

2.5 PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020540504.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||*|||||||||||||||||||
targets:1878   UCCCGGGUCACCAAAUCAGCCCUA   1901

0.0 PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020540503.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||*|||||||||||||||||||
targets:2316   UCCCGGGUCACCAAAUCAGCCCUA   2339

0.0 PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552860.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |=|=|||||||||||||||=||||
targets:2444   UUCUCGGUCACCAAAUCAGUCCUA   2467

1.5 PREDICTED: Zea mays polyadenylate-binding protein-interacting protein 4 (LOC103654662), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020552859.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |=|=|||||||||||||||=||||
targets:2444   UUCUCGGUCACCAAAUCAGUCCUA   2467

1.5 PREDICTED: Zea mays polyadenylate-binding protein-interacting protein 4 (LOC103654662), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020552857.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |=|=|||||||||||||||=||||
targets:2447   UUCUCGGUCACCAAAUCAGUCCUA   2470

1.5 PREDICTED: Zea mays polyadenylate-binding protein-interacting protein 4 (LOC103654662), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552858.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |=|=|||||||||||||||=||||
targets:2471   UUCUCGGUCACCAAAUCAGUCCUA   2494

1.5 PREDICTED: Zea mays polyadenylate-binding protein-interacting protein 4 (LOC103654662), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008681499.2
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |=|=|||||||||||||||=||||
targets:2518   UUCUCGGUCACCAAAUCAGUCCUA   2541

1.5 PREDICTED: Zea mays polyadenylate-binding protein-interacting protein 4 (LOC103654662), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008681501.2
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |=|=|||||||||||||||=||||
targets:2533   UUCUCGGUCACCAAAUCAGUCCUA   2556

1.5 PREDICTED: Zea mays polyadenylate-binding protein-interacting protein 4 (LOC103654662), transcript variant X6, mRNA NA coding protein psRNATarget
HI403275.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=||||||||||||||||=|*
targets:100   UCCCUGGUCACCAAAUCAGCCUUC   123

2.5 Sequence 1400 from Patent EP2074227 NA coding protein psRNATarget
LQ235405.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=||||||||||||||||=|*
targets:100   UCCCUGGUCACCAAAUCAGCCUUC   123

2.5 Sequence 1400 from Patent EP2985353 NA coding protein psRNATarget
JB163736.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=||||||||||||||||=|*
targets:100   UCCCUGGUCACCAAAUCAGCCUUC   123

2.5 Sequence 1400 from Patent EP2559767 NA coding protein psRNATarget
LQ235420.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=||||||||||||||||*||
targets:100   UCCCUGGUCACCAAAUCAGCCGUA   123

1.5 Sequence 1415 from Patent EP2985353 NA coding protein psRNATarget
JB163751.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=||||||||||||||||*||
targets:100   UCCCUGGUCACCAAAUCAGCCGUA   123

1.5 Sequence 1415 from Patent EP2559767 NA coding protein psRNATarget
HI403290.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=||||||||||||||||*||
targets:100   UCCCUGGUCACCAAAUCAGCCGUA   123

1.5 Sequence 1415 from Patent EP2074227 NA coding protein psRNATarget
LQ235479.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=||||||||||||||||*||
targets:132   UCCCUGGUCACCAAAUCAGCCAUA   155

1.5 Sequence 1474 from Patent EP2985353 NA coding protein psRNATarget
JB163810.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=||||||||||||||||*||
targets:132   UCCCUGGUCACCAAAUCAGCCAUA   155

1.5 Sequence 1474 from Patent EP2559767 NA coding protein psRNATarget
HI403349.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=||||||||||||||||*||
targets:132   UCCCUGGUCACCAAAUCAGCCAUA   155

1.5 Sequence 1474 from Patent EP2074227 NA coding protein psRNATarget
EU945757.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |==|=||||||||||||||=||||
targets:70   UUUCUGGUCACCAAAUCAGUCCUA   93

1.5 Zea mays clone 284734 mRNA sequence NA coding protein psRNATarget
XM_008675221.2
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=|||||||||||||||||**
targets:181   UCCCUGGUCACCAAAUCAGCCCGC   204

2.5 PREDICTED: Zea mays gibberellin responsive 1 (gar1), transcript variant X2, mRNA NA coding protein psRNATarget
EU974244.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||*||||||||||||||||||||*
targets:491   UCACCGGUCACCAAAUCAGCCCUU   514

1.0 Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds NA coding protein psRNATarget
NM_001148227.2
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |||||||||||||||*|||||||*
targets:318   UCCCCGGUCACCAAACCAGCCCUC   341

2.5 Zea mays 26S proteasome non-ATPase regulatory subunit 13 homolog A (LOC100273828), mRNA NA coding protein psRNATarget
BT041878.2
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |||||||||||||||*|||||||*
targets:318   UCCCCGGUCACCAAACCAGCCCUC   341

2.5 Zea mays full-length cDNA clone ZM_BFb0072B21 mRNA, complete cds NA coding protein psRNATarget
BT087775.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |||||||||||||||*|||||||*
targets:325   UCCCCGGUCACCAAACCAGCCCUC   348

2.5 Zea mays full-length cDNA clone ZM_BFb0195K06 mRNA, complete cds NA coding protein psRNATarget
XM_008667438.2
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||*|=|||||||||||||||=|||
targets:3568   UCGCUGGUCACCAAAUCAGCUCUA   3591

1.5 PREDICTED: Zea mays BRCA1 C Terminus domain containing protein expressed (LOC103644241), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539542.1
ncRNA:24   AGG-GGCCAGUGGUUUAGUCGGGAU   1
  |||-|=*||||||||||||||||||
targets:162   UCCACUUGUCACCAAAUCAGCCCUA   186

1.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008651348.2
ncRNA:24   AGG-GGCCAGUGGUUUAGUCGGGAU   1
  |||-|=*||||||||||||||||||
targets:162   UCCACUUGUCACCAAAUCAGCCCUA   186

1.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020539541.1
ncRNA:24   AGG-GGCCAGUGGUUUAGUCGGGAU   1
  |||-|=*||||||||||||||||||
targets:162   UCCACUUGUCACCAAAUCAGCCCUA   186

1.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA NA coding protein psRNATarget
BT018533.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||=|=|*|||=||||||||||||*
targets:1919   UCUCUGAUCAUCAAAUCAGCCCUU   1942

3.0 Zea mays clone EL01N0434E06.d mRNA sequence NA coding protein psRNATarget
XM_020551688.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||*|||||||||||||*||||*
targets:2181   UCCCGGGUCACCAAAUCAACCCUU   2204

2.5 PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA NA coding protein psRNATarget
DQ244411.1
ncRNA:24   AGG-----GGCCAGUGGUUUAGUCGGG-AU   1
  |=|-----|=|||||||||||||||||-||
targets:717   UUCAAAGGCUGGUCACCAAAUCAGCCCAUA   746

3.0 Zea mays clone 7242 mRNA sequence NA coding protein psRNATarget
EU941266.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=**|||=|||||||||||||
targets:687   UCCCUAAUCAUCAAAUCAGCCCUA   710

3.0 Zea mays clone 1435213 mRNA sequence NA coding protein psRNATarget
NM_001317055.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |=||*||||||||||||||||*|=
targets:1529   UUCCGGGUCACCAAAUCAGCCAUG   1552

2.5 Zea mays Membrane metalloprotease ARASP chloroplastic (LOC100274122), mRNA NA coding protein psRNATarget
BT042257.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  |=||*||||||||||||||||*|=
targets:1529   UUCCGGGUCACCAAAUCAGCCAUG   1552

2.5 Zea mays full-length cDNA clone ZM_BFb0181O20 mRNA, complete cds NA coding protein psRNATarget
BT036026.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||*|=||||||||||*|||||||*
targets:1128   UCACUGGUCACCAAACCAGCCCUC   1151

2.5 Zea mays full-length cDNA clone ZM_BFb0092G03 mRNA, complete cds NA coding protein psRNATarget
EU970908.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||*|=||||||||||*|||||||*
targets:1186   UCACUGGUCACCAAACCAGCCCUC   1209

2.5 Zea mays clone 353773 COV1-like protein mRNA, complete cds NA coding protein psRNATarget
NM_001138498.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||*|=||||||||||*|||||||*
targets:1228   UCACUGGUCACCAAACCAGCCCUC   1251

2.5 Zea mays COV1-like protein (LOC100193368), mRNA NA coding protein psRNATarget
BT035612.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||*|=||||||||||*|||||||*
targets:1228   UCACUGGUCACCAAACCAGCCCUC   1251

2.5 Zea mays full-length cDNA clone ZM_BFb0071P21 mRNA, complete cds NA coding protein psRNATarget
XM_020549479.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||*|=||||||||||*|||||||*
targets:1333   UCACUGGUCACCAAACCAGCCCUC   1356

2.5 PREDICTED: Zea mays COV1-like protein (LOC100193368), transcript variant X1, mRNA NA coding protein psRNATarget
BT064402.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||*|=||||||||||*|||||||*
targets:1439   UCACUGGUCACCAAACCAGCCCUC   1462

2.5 Zea mays full-length cDNA clone ZM_BFc0166C02 mRNA, complete cds NA coding protein psRNATarget
BT066676.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=***||||||||||||||||
targets:1340   UCCCUAACCACCAAAUCAGCCCUA   1363

3.0 Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds NA coding protein psRNATarget
NM_001175907.1
ncRNA:24   AGGGGCCAGUGGUUUAGUCGGGAU   1
  ||||=***||||||||||||||||
targets:1340   UCCCUAACCACCAAAUCAGCCCUA   1363

3.0 Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA NA coding protein psRNATarget