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BaseInfo

ncRNA ID	novel_zma_miR9188
Species	Zea mays
Class	miRNA
Genome position	Chr2:199600780-199600872 [-]
Reference genome	RefGen_v4
Source	SRR4237222;SRR4237226
Length	24
Mature sequence(if miRNA)	70 - CUAGAGAUGACAAUGGGUACCCGA - 93
Stem-loop(if miRNA)	--   -   -    C   GG U    G       AA    --     AUU   CUA GAG AUGA AAU  G ACCC AAACCCG  ACCC  GAUGG   U   ||| ||| |||| |||  | |||| |||||||  ||||  |||||   U   GGU CUC UACU UUA  C UGGG UUUGGGC  UGGG  UUACU   U CG   A   A    U   -A -    -       -A    AU     CCA
Stem-loop sequence	CUAGAGAUGACAAUGGGUACCCGAAACCCGAAACCCGAUGGAUUUUUACCUCAUUUAGGGUACGGGUUUGGGUCAAUUUUCAUACUCAUGGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008655714.1	ncRNA:24   AGCCCAUGGGUAACAGUAGAGAUC   1   ||||||||||||||*||||||||| targets:47   UCGGGUACCCAUUGCCAUCUCUAG   70 Target Full Sequence	1.5	PREDICTED: Zea mays glycine-rich RNA-binding, abscisic acid-inducible protein-like (LOC103634099), mRNA	NA	coding protein	psRNATarget
EZ054996.1	ncRNA:24   AGCCCAUGGGUAACAGUAGAGAUC   1   ||||||||||||||*||||||||| targets:210   UCGGGUACCCAUUGCCAUCUCUAG   233 Target Full Sequence	1.5	TSA: Zea mays contig56118, mRNA sequence	NA	coding protein	psRNATarget
BT069414.2	ncRNA:24   AGCCCAUGGGUAACAGUAGAGAUC   1   ||||||||||||||*||||||||* targets:299   UCGGGUACCCAUUGCCAUCUCUAC   322 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0118M13 mRNA, complete cds	NA	coding protein	psRNATarget
BT042623.2	ncRNA:24   AGCCCAUGGGUAACAGUAGAGAUC   1   ||||||||||||||*||||||||* targets:924   UCGGGUACCCAUUGCCAUCUCUAA   947 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0377K06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667001.2	ncRNA:24   AGCCCAUGGGUAACAGUAGAGAUC   1   ||||||||||||||*||||||||* targets:130   UCGGGUACCCAUUGCCAUCUCUAC   153 Target Full Sequence	2.5	PREDICTED: Zea mays histone H3.v1 (LOC103643837), mRNA	NA	coding protein	psRNATarget
XM_020539036.1	ncRNA:24   AGCCCAUGGGUAACAGUAGAGAUC   1   *=||||||||||||*||||||||| targets:48   GUGGGUACCCAUUGCCAUCUCUAG   71 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100303962), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646250.2	ncRNA:24   AGCCCAUGGGUAACAGUAGAGAUC   1   ||||||*|||||||*||||||||| targets:1   UCGGGUCCCCAUUGCCAUCUCUAG   24 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103625855 (LOC103625855), mRNA	NA	coding protein	psRNATarget
EZ097687.1	ncRNA:24   AGCCCAUGGGUAACAGUAGAGAUC   1   *|||||||||||||*||||||||* targets:53   GCGGGUACCCAUUGCCAUCUCUAA   76 Target Full Sequence	2.5	TSA: Zea mays contig33342, mRNA sequence	NA	coding protein	psRNATarget
XM_020548385.1	ncRNA:24   AGCCCAUGGGUAACAGUAGAGAUC   1   *=||||||||||||*||||||||* targets:68   GUGGGUACCCAUUGCCAUCUCUAC   91 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382600 (LOC100382600), mRNA	NA	coding protein	psRNATarget
XM_020549497.1	ncRNA:24   AGCCCAUGGGUAACAGUAGAGAUC   1   ******|||||||||||||||||| targets:1864   AAACUGACCCAUUGUCAUCUCUAG   1887 Target Full Sequence	1.0	PREDICTED: Zea mays Amino-acid permease BAT1 (si486073c04), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008673964.2	ncRNA:24   AGCCCAUGGGUAACAGUAGAGAUC   1   ******|||||||||||||||||| targets:1861   AAACUGACCCAUUGUCAUCUCUAG   1884 Target Full Sequence	1.0	PREDICTED: Zea mays Amino-acid permease BAT1 (si486073c04), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549495.1	ncRNA:24   AGCCCAUGGGUAACAGUAGAGAUC   1   ******|||||||||||||||||| targets:1862   AAACUGACCCAUUGUCAUCUCUAG   1885 Target Full Sequence	1.0	PREDICTED: Zea mays Amino-acid permease BAT1 (si486073c04), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963786.1	ncRNA:24   AGCCCAUGGGUAACAGUAGAGAUC   1   *|***|||||||||*||||||||| targets:7   CCAUUUACCCAUUGCCAUCUCUAG   30 Target Full Sequence	1.5	Zea mays clone 272653 mRNA sequence	NA	coding protein	psRNATarget