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BaseInfo

ncRNA ID	novel_zma_miR9186
Species	Zea mays
Class	miRNA
Genome position	Chr2:213266706-213266831 [-]
Reference genome	RefGen_v4
Source	SRR4237222
Length	22
Mature sequence(if miRNA)	1 - UUGUGAGGGGCUGCAAACAGUC - 22
Stem-loop(if miRNA)	--      A                   A             C    A  AAUAACACAACUAAAA    A   CUGUUU CAGCCCCUCACAAAAAGGA UAUAGACUCCACC GCAG UC                CAUU U   |||||| ||||||||||||||||||| ||||||||||||| |||| ||                ||||   GACAAA GUCGGGGAGUGUUUUUCCU AUAUCUGGGGUGG CGUC AG                GUAG C CU      C                   C             A    C  ----------------    U
Stem-loop sequence	CUGUUUACAGCCCCUCACAAAAAGGAAUAUAGACUCCACCCGCAGAUCAAUAACACAACUAAAACAUUAUCUGAUGGACCUGCAGGUGGGGUCUAUACUCCUUUUUGUGAGGGGCUGCAAACAGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163679.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |=|||||||||||||||||||| targets:9   GGCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	0.0	Sequence 1343 from Patent EP2559767	NA	coding protein	psRNATarget
JB163519.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   ||||||||||||||=||||||| targets:8   GACUGUUUGCAGCCUCUCACAA   29 Target Full Sequence	1.5	Sequence 1183 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235188.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   ||||||||||||||=||||||| targets:8   GACUGUUUGCAGCCUCUCACAA   29 Target Full Sequence	1.5	Sequence 1183 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235358.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |=|||||||||||||||||||| targets:9   GGCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	0.0	Sequence 1353 from Patent EP2985353	NA	coding protein	psRNATarget
HI403218.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |=|||||||||||||||||||| targets:9   GGCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	0.0	Sequence 1343 from Patent EP2074227	NA	coding protein	psRNATarget
JB163689.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |=|||||||||||||||||||| targets:9   GGCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	0.0	Sequence 1353 from Patent EP2559767	NA	coding protein	psRNATarget
HI403228.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |=|||||||||||||||||||| targets:9   GGCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	0.0	Sequence 1353 from Patent EP2074227	NA	coding protein	psRNATarget
HI403058.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   ||||||||||||||=||||||| targets:8   GACUGUUUGCAGCCUCUCACAA   29 Target Full Sequence	1.5	Sequence 1183 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235348.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |=|||||||||||||||||||| targets:9   GGCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	0.0	Sequence 1343 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008653247.2	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |=|||||||||||||||||||| targets:24   GGCUGUUUGCAGCCCCUCACAA   45 Target Full Sequence	0.0	PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA	NA	coding protein	psRNATarget
XM_020547144.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |=|||||||||||||||||||| targets:141   GGCUGUUUGCAGCCCCUCACAA   162 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103636662 (LOC103636662), mRNA	NA	coding protein	psRNATarget
JB163848.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |*|||||||||||||||||=|| targets:8   GCCUGUUUGCAGCCCCUCAUAA   29 Target Full Sequence	1.5	Sequence 1512 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235480.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |*|||||||||||||||||=|| targets:8   GCCUGUUUGCAGCCCCUCAUAA   29 Target Full Sequence	1.5	Sequence 1475 from Patent EP2985353	NA	coding protein	psRNATarget
HI403387.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |*|||||||||||||||||=|| targets:8   GCCUGUUUGCAGCCCCUCAUAA   29 Target Full Sequence	1.5	Sequence 1512 from Patent EP2074227	NA	coding protein	psRNATarget
JB163811.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |*|||||||||||||||||=|| targets:8   GCCUGUUUGCAGCCCCUCAUAA   29 Target Full Sequence	1.5	Sequence 1475 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235517.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |*|||||||||||||||||=|| targets:8   GCCUGUUUGCAGCCCCUCAUAA   29 Target Full Sequence	1.5	Sequence 1512 from Patent EP2985353	NA	coding protein	psRNATarget
HI403350.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |*|||||||||||||||||=|| targets:8   GCCUGUUUGCAGCCCCUCAUAA   29 Target Full Sequence	1.5	Sequence 1475 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008679788.2	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   ||*|||||||||=||||||||| targets:477   GAAUGUUUGCAGUCCCUCACAA   498 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103652812 (LOC103652812), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545800.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |=|*|||||||||||||||||| targets:869   GGCCGUUUGCAGCCCCUCACAA   890 Target Full Sequence	1.0	PREDICTED: Zea mays embryo sac development arrest 6 (LOC103641842), mRNA	NA	coding protein	psRNATarget
JB163804.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |=||*|||||||=||||||||| targets:9   GGCUAUUUGCAGUCCCUCACAA   30 Target Full Sequence	2.5	Sequence 1468 from Patent EP2559767	NA	coding protein	psRNATarget
HI403343.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |=||*|||||||=||||||||| targets:9   GGCUAUUUGCAGUCCCUCACAA   30 Target Full Sequence	2.5	Sequence 1468 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235473.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   |=||*|||||||=||||||||| targets:9   GGCUAUUUGCAGUCCCUCACAA   30 Target Full Sequence	2.5	Sequence 1468 from Patent EP2985353	NA	coding protein	psRNATarget
X55314.1	ncRNA:22   CUGAC-AAACGUCGGGGAGUGUU   1   ||*||-||||||||||||||||| targets:910   GAGUGGUUUGCAGCCCCUCACAA   932 Target Full Sequence	2.0	Zea mays A2 gene	NA	coding protein	psRNATarget
BT033928.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   ||*|||||*|||=||||||||| targets:2075   GAAUGUUUACAGUCCCUCACAA   2096 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0036M23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137162.1	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   ||*|||||*|||=||||||||| targets:2075   GAAUGUUUACAGUCCCUCACAA   2096 Target Full Sequence	2.5	Zea mays uncharacterized LOC100191734 (LOC100191734), mRNA	NA	coding protein	psRNATarget
XM_008682759.2	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   ||*|||||*|||=||||||||| targets:2513   GAAUGUUUACAGUCCCUCACAA   2534 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682758.2	ncRNA:22   CUGACAAACGUCGGGGAGUGUU   1   ||*|||||*|||=||||||||| targets:2516   GAAUGUUUACAGUCCCUCACAA   2537 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X1, mRNA	NA	coding protein	psRNATarget