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BaseInfo

ncRNA ID	novel_zma_miR9182
Species	Zea mays
Class	miRNA
Genome position	Chr10:83604329-83604460 [-]
Reference genome	RefGen_v4
Source	SRR4237222
Length	23
Mature sequence(if miRNA)	1 - UUUCCAAACUAGUCCUUAGCUGU - 23
Stem-loop(if miRNA)	--UU  U           A     C        UC AA      UC      A   -A     AUU     CU AGGACUAGUUU GAAAC AUAUUUUU  A  GGAUUU  AUUUUU CAA  GAAAA   A     || ||||||||||| ||||| ||||||||  |  ||||||  |||||| |||  |||||   G     GA UCCUGAUCAAA CUUUG UGUAAAAA  U  UCUAAA  UAAAAA GUU  CUUUU   U UGUC  U           C     A        GA AC      GA      A   CC     ACU
Stem-loop sequence	UUCUUAGGACUAGUUUAGAAACCAUAUUUUUUCAAAGGAUUUUCAUUUUUACAAAGAAAAAUUAGUUCAUUUUCCCUUGAAAAAAUAGAAAUCUCAUAGAAAAAUGUAGUUUCCAAACUAGUCCUUAGCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT038305.1	ncRNA:23   UGUCG-AUUCCUGAUCAAACCUUU   1   |=|||-|*|||||||||||||||| targets:537   AUAGCCUUAGGACUAGUUUGGAAA   560 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0224P03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541843.1	ncRNA:23   UGUCG-AUUCCUGAUCAAACCUUU   1   |=|||-|*|||||||||||||||| targets:1542   AUAGCCUUAGGACUAGUUUGGAAA   1565 Target Full Sequence	3.0	PREDICTED: Zea mays putative actin family protein (LOC100191561), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550095.1	ncRNA:23   UGUCG-AUUCCUGAUCAAACCUUU   1   |=|*|-|||||||||||||||||| targets:108   AUACCAUAAGGACUAGUUUGGAAA   131 Target Full Sequence	2.0	PREDICTED: Zea mays putative nuclease HARBI1 (LOC103649690), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU941872.1	ncRNA:23   UGUCGAUUCCUGAUCAAACCUUU   1   ||**||||||=|||||||||||| targets:22   ACCUCUAAGGGCUAGUUUGGAAA   44 Target Full Sequence	1.5	Zea mays clone 1471472 mRNA sequence	NA	coding protein	psRNATarget
EU944212.1	ncRNA:23   UGU--CGAUUCCUGAUCAAACCUUU   1   =||--||*|||||||||*||||||| targets:526   GCAACGCCAAGGACUAGAUUGGAAA   550 Target Full Sequence	2.5	Zea mays clone 207927 mRNA sequence	NA	coding protein	psRNATarget
NM_001308288.1	ncRNA:23   UGU--CGAUUCCUGAUCAAACCUUU   1   |=|--|||*|||*|||||||||||| targets:1390   AUAUUGCUUAGGUCUAGUUUGGAAA   1414 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275687 (LOC100275687), mRNA	NA	coding protein	psRNATarget
EU957474.1	ncRNA:23   UGU--CGAUUCCUGAUCAAACCUUU   1   |=|--|||*|||*|||||||||||| targets:1574   AUAUUGCUUAGGUCUAGUUUGGAAA   1598 Target Full Sequence	2.5	Zea mays clone 1593695 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676336.2	ncRNA:23   UGUCGAUUCCUGAUCAAACCUUU   1   *||-||*|||=|||||||||||| targets:4275   UCA-CUUAGGGCUAGUUUGGAAA   4296 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008676333.2	ncRNA:23   UGUCGAUUCCUGAUCAAACCUUU   1   *||-||*|||=|||||||||||| targets:4289   UCA-CUUAGGGCUAGUUUGGAAA   4310 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676335.2	ncRNA:23   UGUCGAUUCCUGAUCAAACCUUU   1   *||-||*|||=|||||||||||| targets:4302   UCA-CUUAGGGCUAGUUUGGAAA   4323 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X2, mRNA	NA	coding protein	psRNATarget