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BaseInfo

ncRNA ID novel_zma_miR9173
Species Zea mays
Class miRNA
Genome position Chr3:38010817-38010876 [-]
Reference genome RefGen_v4
Source SRR1997865
Length 24
Mature sequence(if miRNA) 37 - UGAUUGGAGGGGAUUGAGGGGGAA - 60
Stem-loop(if miRNA) --U           A             GA
   GAUUGGAGGGG UUGAGGGGGAAAU  A
   ||||||||||| |||||||||||||
   UUAACCUCCCC AACUCCUCCUUUA  C
CCU           C             AU
Stem-loop sequence UGAUUGGAGGGGAUUGAGGGGGAAAUGAACUAAUUUCCUCCUCAACCCCCUCCAAUUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008649581.2
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  ||||||||||||||||||=||||*
targets:1797   UUCCCCCUCAAUCCCCUCUAAUCC   1820

2.5 PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551688.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  |||||||||||||||||||=|||*
targets:2149   UUCCCCCUCAAUCCCCUCCGAUCC   2172

2.5 PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA NA coding protein psRNATarget
HI403493.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  *||||||||||||||||||||||*
targets:31   AUCCCCCUCAAUCCCCUCCAAUCC   54

1.0 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
JB163954.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  *||||||||||||||||||||||*
targets:31   AUCCCCCUCAAUCCCCUCCAAUCC   54

1.0 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
LQ235623.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  *||||||||||||||||||||||*
targets:31   AUCCCCCUCAAUCCCCUCCAAUCC   54

1.0 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
NM_001317055.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  |||=||||||=||||||=||||||
targets:1497   UUCUCCCUCAGUCCCCUUCAAUCA   1520

2.5 Zea mays Membrane metalloprotease ARASP chloroplastic (LOC100274122), mRNA NA coding protein psRNATarget
BT042257.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  |||=||||||=||||||=||||||
targets:1497   UUCUCCCUCAGUCCCCUUCAAUCA   1520

2.5 Zea mays full-length cDNA clone ZM_BFb0181O20 mRNA, complete cds NA coding protein psRNATarget
BT088155.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  |||=|=|||||||||||||||||*
targets:1462   UUCUCUCUCAAUCCCCUCCAAUCC   1485

2.0 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
XM_020547043.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  *||||||||||||||||||=|||*
targets:3174   AUCCCCCUCAAUCCCCUCCGAUCC   3197

2.5 PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA NA coding protein psRNATarget
HI403355.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  *|=|=||||||||||||||||||*
targets:29   AUUCUCCUCAAUCCCCUCCAAUCC   52

1.0 Sequence 1480 from Patent EP2074227 NA coding protein psRNATarget
LQ235485.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  *|=|=||||||||||||||||||*
targets:29   AUUCUCCUCAAUCCCCUCCAAUCC   52

1.0 Sequence 1480 from Patent EP2985353 NA coding protein psRNATarget
JB163816.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  *|=|=||||||||||||||||||*
targets:29   AUUCUCCUCAAUCCCCUCCAAUCC   52

1.0 Sequence 1480 from Patent EP2559767 NA coding protein psRNATarget
HI402991.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  *||=|||||||||||||=|||||*
targets:83   AUCUCCCUCAAUCCCCUUCAAUCC   106

2.5 Sequence 1116 from Patent EP2074227 NA coding protein psRNATarget
JB163452.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  *||=|||||||||||||=|||||*
targets:83   AUCUCCCUCAAUCCCCUUCAAUCC   106

2.5 Sequence 1116 from Patent EP2559767 NA coding protein psRNATarget
LQ235121.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  *||=|||||||||||||=|||||*
targets:83   AUCUCCCUCAAUCCCCUUCAAUCC   106

2.5 Sequence 1116 from Patent EP2985353 NA coding protein psRNATarget
JB163751.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  |||=|*|||||||||||||||||*
targets:69   UUCUCACUCAAUCCCCUCCAAUCC   92

2.0 Sequence 1415 from Patent EP2559767 NA coding protein psRNATarget
LQ235420.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  |||=|*|||||||||||||||||*
targets:69   UUCUCACUCAAUCCCCUCCAAUCC   92

2.0 Sequence 1415 from Patent EP2985353 NA coding protein psRNATarget
HI403290.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  |||=|*|||||||||||||||||*
targets:69   UUCUCACUCAAUCCCCUCCAAUCC   92

2.0 Sequence 1415 from Patent EP2074227 NA coding protein psRNATarget
EZ055746.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  ||=|*||||||||||||||||||*
targets:74   UUUCACCUCAAUCCCCUCCAAUCC   97

1.0 TSA: Zea mays contig56868, mRNA sequence NA coding protein psRNATarget
AY110351.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  ||=|*||||||||||||||||||*
targets:40   UUUCACCUCAAUCCCCUCCAAUCC   63

1.0 Zea mays CL33021_1 mRNA sequence NA coding protein psRNATarget
XM_020546477.1
ncRNA:24   AA--GGGGGAGUUAGGGGAGGUUAGU   1
  ||--||||||||||||||||||=||*
targets:7   UUAGCCCCCUCAAUCCCCUCCAGUCC   32

2.5 PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA NA coding protein psRNATarget
XM_020549567.1
ncRNA:24   AAG---GGGGAGUUAGGGGAGGUUAGU   1
  |||---|||||||||||||||=||||*
targets:1063   UUCUAGCCCCUCAAUCCCCUCUAAUCC   1089

2.5 PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008672733.2
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  ||||*|||||||||=||||||||*
targets:2428   UUCCACCUCAAUCCUCUCCAAUCC   2451

2.5 PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA NA coding protein psRNATarget
EZ098881.1
ncRNA:24   AAGGGGGAGUUAGGGGAGGUUAGU   1
  *|==||||=||||||||||||||*
targets:76   CUUUCCCUUAAUCCCCUCCAAUCC   99

2.0 TSA: Zea mays contig34536, mRNA sequence NA coding protein psRNATarget
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