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BaseInfo

ncRNA ID novel_zma_miR9171
Species Zea mays
Class miRNA
Genome position Chr1:103897260-103897312 [+]
Reference genome RefGen_v4
Source SRR4237222;SRR4237226
Length 22
Mature sequence(if miRNA) 32 - UCGGCGCUAUAGAUCUUGGCGC - 53
Stem-loop(if miRNA) --    U  G     A       UUU
  GCUA GA CUAUG UGUCGAG   A
  |||| || ||||| |||||||   C
  CGGU CU GAUAU GCGGCUC   A
CG    U  A     C       UAU
Stem-loop sequence GCUAUGAGCUAUGAUGUCGAGUUUACAUAUCUCGGCGCUAUAGAUCUUGGCGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166443.1
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:152   GCGCCAAGAUCUAUGGCGCCGA   173

1.5 Sequence 4107 from Patent EP2559767 NA coding protein psRNATarget
LQ238112.1
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:152   GCGCCAAGAUCUAUGGCGCCGA   173

1.5 Sequence 4107 from Patent EP2985353 NA coding protein psRNATarget
HI405982.1
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:152   GCGCCAAGAUCUAUGGCGCCGA   173

1.5 Sequence 4107 from Patent EP2074227 NA coding protein psRNATarget
XM_008664820.2
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:20   GCGCCAAGAUCUAUGGCGCCGA   41

1.5 PREDICTED: Zea mays uncharacterized LOC103641469 (LOC103641469), mRNA NA coding protein psRNATarget
XM_020544295.1
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:65   GCGCCAAGAUCUAUGGCGCCGA   86

1.5 PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA NA coding protein psRNATarget
XM_020548134.1
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:42   GCGCCAAGAUCUAUGGCGCCGA   63

1.5 PREDICTED: Zea mays uncharacterized LOC109943956 (LOC109943956), mRNA NA coding protein psRNATarget
XM_008666282.2
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:222   GCGCCAAGAUCUAUGGCGCCGA   243

1.5 PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA NA coding protein psRNATarget
XM_020545943.1
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:222   GCGCCAAGAUCUAUGGCGCCGA   243

1.5 PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA NA coding protein psRNATarget
XM_020545942.1
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:222   GCGCCAAGAUCUAUGGCGCCGA   243

1.5 PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA NA coding protein psRNATarget
XM_008652363.2
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:226   GCGCCAAGAUCUAUGGCGCCGA   247

1.5 PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA NA coding protein psRNATarget
XM_020541347.1
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:226   GCGCCAAGAUCUAUGGCGCCGA   247

1.5 PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA NA coding protein psRNATarget
XM_020537732.1
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:291   GCGCCAAGAUCUAUGGCGCCGA   312

1.5 PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA NA coding protein psRNATarget
XM_008654703.2
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:998   GCGCCAAGAUCUAUGGCGCCGA   1019

1.5 PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA NA coding protein psRNATarget
XM_020547329.1
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:1844   GCGCCAAGAUCUAUGGCGCCGA   1865

1.5 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547327.1
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:1869   GCGCCAAGAUCUAUGGCGCCGA   1890

1.5 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008668082.2
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  ||||||||||||||=|||||||
targets:1876   GCGCCAAGAUCUAUGGCGCCGA   1897

1.5 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020544775.1
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  |||=||||||||||=|||||||
targets:149   GCGUCAAGAUCUAUGGCGCCGA   170

2.5 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA NA coding protein psRNATarget
XM_020552215.1
ncRNA:22   CGCGGUUCUAGAUAUCGCGGCU   1
  *|||||||||||||=|||||||
targets:11   ACGCCAAGAUCUAUGGCGCCGA   32

1.5 PREDICTED: Zea mays skin secretory protein xP2-like (LOC109945850), mRNA NA coding protein psRNATarget
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