Search result

BaseInfo

ncRNA ID	novel_zma_miR9170
Species	Zea mays
Class	miRNA
Genome position	Chr1:74274211-74274345 [+]
Reference genome	RefGen_v4
Source	SRR4237222;SRR4237223;SRR4237225;SRR4237227
Length	24
Mature sequence(if miRNA)	112 - AAUGGGAAUAACCGAACAAGACCU - 135
Stem-loop(if miRNA)	--GC             C     AUCC             U        -U      AAUCCCA   AAG     CUUGUUCGGUUAU UCUUA    AUGUGGAUUGAGU GGAUUGGG  GGUUUA       AAC   U     ||||||||||||| |||||    ||||||||||||| ||||||||  ||||||       |||     GAACAAGCCAAUA AGGGU    UAUACCUAACUCG CCUAACCU  UUAAAU       UUG   C UCCA             -     AAUA             C        UU      ---CUUC   AAA
Stem-loop sequence	GCCUUGUUCGGUUAUCUCUUAAUCCAUGUGGAUUGAGUUGGAUUGGGUGGUUUAAAUCCCAAACAAGUCAAAGUUCUUCUAAAUUUUUCCAAUCCCGCUCAAUCCAUAUAUAAUGGGAAUAACCGAACAAGACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT042044.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   ||||||||||||||||||||=||* targets:1278   AGGUCUUGUUCGGUUAUUCCUAUA   1301 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152333.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   ||||||||||||||||||||=||* targets:1918   AGGUCUUGUUCGGUUAUUCCUAUA   1941 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100279312), mRNA	NA	coding protein	psRNATarget
BT054015.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   ||||||||||||||||||||=||* targets:1918   AGGUCUUGUUCGGUUAUUCCUAUA   1941 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0125C21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669549.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   ||||||||||||||||||||=||* targets:1995   AGGUCUUGUUCGGUUAUUCCUAUA   2018 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238785.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*|||||||||||||||=|||| targets:64   AGGCCUUGUUCGGUUAUUCUCAUU   87 Target Full Sequence	1.5	Sequence 4780 from Patent EP2985353	NA	coding protein	psRNATarget
JB167116.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*|||||||||||||||=|||| targets:64   AGGCCUUGUUCGGUUAUUCUCAUU   87 Target Full Sequence	1.5	Sequence 4780 from Patent EP2559767	NA	coding protein	psRNATarget
HI406655.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*|||||||||||||||=|||| targets:64   AGGCCUUGUUCGGUUAUUCUCAUU   87 Target Full Sequence	1.5	Sequence 4780 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008674362.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||| targets:473   AGGCCUUGUUCGGUUAUUCCUAUU   496 Target Full Sequence	1.5	PREDICTED: Zea mays Membrane magnesium transporter (LOC100276290), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU975230.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||| targets:478   AGGCCUUGUUCGGUUAUUCCUAUU   501 Target Full Sequence	1.5	Zea mays clone 485079 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU973494.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||| targets:490   AGGCCUUGUUCGGUUAUUCCUAUU   513 Target Full Sequence	1.5	Zea mays clone 399694 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001291558.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||| targets:614   AGGCCUUGUUCGGUUAUUCCUAUU   637 Target Full Sequence	1.5	Zea mays Membrane magnesium transporter (LOC100276290), mRNA	NA	coding protein	psRNATarget
EU964394.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||| targets:615   AGGCCUUGUUCGGUUAUUCCUAUU   638 Target Full Sequence	1.5	Zea mays clone 278539 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU976922.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||| targets:651   AGGCCUUGUUCGGUUAUUCCUAUU   674 Target Full Sequence	1.5	Zea mays clone 993749 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112112.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*=||||||||||||||||||| targets:1701   AGGCUUUGUUCGGUUAUUCCCAUU   1724 Target Full Sequence	0.0	Zea mays nitrilase 1 (NIT1), transcript variant 1, mRNA	NA	coding protein	psRNATarget
AY156979.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*=||||||||||||||||||| targets:1709   AGGCUUUGUUCGGUUAUUCCCAUU   1732 Target Full Sequence	0.0	Zea mays nitrilase 1 (NIT1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_008646066.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*=||||||||||||||||||| targets:1742   AGGCUUUGUUCGGUUAUUCCCAUU   1765 Target Full Sequence	0.0	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020537588.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*=||||||||||||||||||| targets:1761   AGGCUUUGUUCGGUUAUUCCCAUU   1784 Target Full Sequence	0.0	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008646063.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*=||||||||||||||||||| targets:1779   AGGCUUUGUUCGGUUAUUCCCAUU   1802 Target Full Sequence	0.0	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008646064.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*=||||||||||||||||||| targets:1810   AGGCUUUGUUCGGUUAUUCCCAUU   1833 Target Full Sequence	0.0	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020537587.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*=||||||||||||||||||| targets:1828   AGGCUUUGUUCGGUUAUUCCCAUU   1851 Target Full Sequence	0.0	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001175969.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   ||||||||||=|||||||||||*| targets:1870   AGGUCUUGUUUGGUUAUUCCCAAU   1893 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA	NA	coding protein	psRNATarget
BT066874.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   ||||||||||=|||||||||||*| targets:1870   AGGUCUUGUUUGGUUAUUCCCAAU   1893 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds	NA	coding protein	psRNATarget
BT066963.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*=||||||||||||||||||| targets:3091   AGGCUUUGUUCGGUUAUUCCCAUU   3114 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0126L13 mRNA, complete cds	NA	coding protein	psRNATarget
EU948930.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||* targets:317   AGGGCUUGUUCGGUUAUUCCUAUC   340 Target Full Sequence	2.5	Zea mays clone 390579 mRNA sequence	NA	coding protein	psRNATarget
XM_020553062.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||* targets:808   AGGGCUUGUUCGGUUAUUCCUAUC   831 Target Full Sequence	2.5	PREDICTED: Zea mays CASP-like protein 12 (LOC100193285), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001138428.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||* targets:859   AGGGCUUGUUCGGUUAUUCCUAUC   882 Target Full Sequence	2.5	Zea mays CASP-like protein 12 (LOC100193285), mRNA	NA	coding protein	psRNATarget
BT040160.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||* targets:951   AGGGCUUGUUCGGUUAUUCCUAUC   974 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0068H20 mRNA, complete cds	NA	coding protein	psRNATarget
BT036499.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||* targets:953   AGGGCUUGUUCGGUUAUUCCUAUC   976 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0119B07 mRNA, complete cds	NA	coding protein	psRNATarget
EU974225.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||* targets:1088   AGGGCUUGUUCGGUUAUUCCUAUC   1111 Target Full Sequence	2.5	Zea mays clone 443257 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT035508.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||* targets:1278   AGGGCUUGUUCGGUUAUUCCUAUC   1301 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0066P20 mRNA, complete cds	NA	coding protein	psRNATarget
EU963392.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||* targets:1608   AGGGCUUGUUCGGUUAUUCCUAUC   1631 Target Full Sequence	2.5	Zea mays clone 261790 cytochrome P450 CYP71K14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175832.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||* targets:1608   AGGGCUUGUUCGGUUAUUCCUAUC   1631 Target Full Sequence	2.5	Zea mays putative cytochrome P450 superfamily protein (LOC100383167), mRNA	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||* targets:1723   AGGGCUUGUUCGGUUAUUCCUAUC   1746 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678388.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||* targets:1739   AGGGCUUGUUCGGUUAUUCCUAUC   1762 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546135.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||* targets:3029   AGGGCUUGUUCGGUUAUUCCUAUC   3052 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546136.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||=||* targets:3176   AGGGCUUGUUCGGUUAUUCCUAUC   3199 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ100118.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:27   AGGGCUUGUUCGGUUAUUCCCAAU   50 Target Full Sequence	1.5	TSA: Zea mays contig35773, mRNA sequence	NA	coding protein	psRNATarget
EZ101233.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |*|*|||||||||||||||||||| targets:38   AAGACUUGUUCGGUUAUUCCCAUU   61 Target Full Sequence	0.0	TSA: Zea mays contig36889, mRNA sequence	NA	coding protein	psRNATarget
JB166339.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1   AGGGCUUGUUCGGUUAUUCCCAAU   24 Target Full Sequence	1.5	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1   AGGGCUUGUUCGGUUAUUCCCAAU   24 Target Full Sequence	1.5	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
HI405878.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1   AGGGCUUGUUCGGUUAUUCCCAAU   24 Target Full Sequence	1.5	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
JB163555.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
JB163551.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
JB163480.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1144 from Patent EP2559767	NA	coding protein	psRNATarget
HI403043.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAGU   33 Target Full Sequence	1.5	Sequence 1168 from Patent EP2074227	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235149.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1144 from Patent EP2985353	NA	coding protein	psRNATarget
HI403005.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1130 from Patent EP2074227	NA	coding protein	psRNATarget
HI403094.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235173.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAGU   33 Target Full Sequence	1.5	Sequence 1168 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
JB163504.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAGU   33 Target Full Sequence	1.5	Sequence 1168 from Patent EP2559767	NA	coding protein	psRNATarget
JB163466.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1130 from Patent EP2559767	NA	coding protein	psRNATarget
HI403019.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1144 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235135.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	1.5	Sequence 1130 from Patent EP2985353	NA	coding protein	psRNATarget
EU949641.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:366   AGGGCUUGUUCGGUUAUUCCCAAU   389 Target Full Sequence	1.5	Zea mays clone 438540 mRNA sequence	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:31   AGGGCUUGUUCGGUUAUUCCCAAU   54 Target Full Sequence	1.5	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
EU942657.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:150   AGGCCUUGUUCGGUUAUUCCCAAU   173 Target Full Sequence	1.5	Zea mays clone 1527578 mRNA sequence	NA	coding protein	psRNATarget
EU942557.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:479   AGGGCUUGUUCGGUUAUUCCCAAU   502 Target Full Sequence	1.5	Zea mays clone 1517970 mRNA sequence	NA	coding protein	psRNATarget
EU951101.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:623   AGGGCUUGUUCGGUUAUUCCCAAU   646 Target Full Sequence	1.5	Zea mays clone 687881 mRNA sequence	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:158   AGGGCUUGUUCGGUUAUUCCCAAU   181 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
AY103719.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:790   AGGGCUUGUUCGGUUAUUCCCAAU   813 Target Full Sequence	1.5	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1040   AGGGCUUGUUCGGUUAUUCCCAAU   1063 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1040   AGGGCUUGUUCGGUUAUUCCCAAU   1063 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
EU962956.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1287   AGGACUUGUUCGGUUAUUCCCAAU   1310 Target Full Sequence	1.5	Zea mays clone 246872 mRNA sequence	NA	coding protein	psRNATarget
EU949831.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:928   AGGCCUUGUUCGGUUAUUCCCAAU   951 Target Full Sequence	1.5	Zea mays clone 447574 mRNA sequence	NA	coding protein	psRNATarget
AY104167.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1392   AGGCCUUGUUCGGUUAUUCCCAAU   1415 Target Full Sequence	1.5	Zea mays PCO062696 mRNA sequence	NA	coding protein	psRNATarget
NM_001148918.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1378   AGGCCUUGUUCGGUUAUUCCCAAU   1401 Target Full Sequence	1.5	Zea mays nodulation homolog 1 (znod1), mRNA	NA	coding protein	psRNATarget
BT043378.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1378   AGGCCUUGUUCGGUUAUUCCCAAU   1401 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1442   AGGCCUUGUUCGGUUAUUCCCAAU   1465 Target Full Sequence	1.5	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1442   AGGCCUUGUUCGGUUAUUCCCAAU   1465 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008659614.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:97   AGGGCUUGUUCGGUUAUUCCCAAU   120 Target Full Sequence	1.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1531   AGGGCUUGUUCGGUUAUUCCCAAU   1554 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553538.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1798   AGGGCUUGUUCGGUUAUUCCCAAU   1821 Target Full Sequence	1.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645867.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1864   AGGGCUUGUUCGGUUAUUCCCAAU   1887 Target Full Sequence	1.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018903.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:1941   AGGGCUUGUUCGGUUAUUCCCAAU   1964 Target Full Sequence	1.5	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:2412   AGGCCUUGUUCGGUUAUUCCCAAU   2435 Target Full Sequence	1.5	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:2712   AGGGCUUGUUCGGUUAUUCCCAAU   2735 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:2816   AGGGCUUGUUCGGUUAUUCCCAAU   2839 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666493.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:3395   AGGCCUUGUUCGGUUAUUCCCAAU   3418 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546709.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:3381   AGGCCUUGUUCGGUUAUUCCCAAU   3404 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008674024.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:3799   AGGGCUUGUUCGGUUAUUCCCAAU   3822 Target Full Sequence	1.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674023.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:3813   AGGGCUUGUUCGGUUAUUCCCAAU   3836 Target Full Sequence	1.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674025.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:3931   AGGGCUUGUUCGGUUAUUCCCAAU   3954 Target Full Sequence	1.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008674021.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:3946   AGGGCUUGUUCGGUUAUUCCCAAU   3969 Target Full Sequence	1.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666491.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:3663   AGGCCUUGUUCGGUUAUUCCCAAU   3686 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666492.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:3668   AGGCCUUGUUCGGUUAUUCCCAAU   3691 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657579.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:7057   AGGCCUUGUUCGGUUAUUCCCAAU   7080 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008657578.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:7161   AGGCCUUGUUCGGUUAUUCCCAAU   7184 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542399.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||*| targets:7172   AGGCCUUGUUCGGUUAUUCCCAAU   7195 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA	NA	coding protein	psRNATarget
HI405841.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||** targets:1   AGGGCUUGUUCGGUUAUUCCCAAA   24 Target Full Sequence	2.5	Sequence 3966 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237971.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||** targets:1   AGGGCUUGUUCGGUUAUUCCCAAA   24 Target Full Sequence	2.5	Sequence 3966 from Patent EP2985353	NA	coding protein	psRNATarget
JB166302.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||** targets:1   AGGGCUUGUUCGGUUAUUCCCAAA   24 Target Full Sequence	2.5	Sequence 3966 from Patent EP2559767	NA	coding protein	psRNATarget
EU951448.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||** targets:657   AGGGCUUGUUCGGUUAUUCCCAAA   680 Target Full Sequence	2.5	Zea mays clone 701961 mRNA sequence	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||** targets:786   AGGGCUUGUUCGGUUAUUCCCAAA   809 Target Full Sequence	2.5	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT069115.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||** targets:439   AGGGCUUGUUCGGUUAUUCCCAAA   462 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||** targets:993   AGGGCUUGUUCGGUUAUUCCCAAA   1016 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||** targets:1111   AGGGCUUGUUCGGUUAUUCCCAAA   1134 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||||||||||||||** targets:1111   AGGGCUUGUUCGGUUAUUCCCAAA   1134 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT024027.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*=|||||||||||||||=||* targets:1552   AGGCUUUGUUCGGUUAUUCCUAUG   1575 Target Full Sequence	2.5	Zea mays clone EL01N0420G12 mRNA sequence	NA	coding protein	psRNATarget
BT055743.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*=|||||||||||||||=||* targets:2257   AGGCUUUGUUCGGUUAUUCCUAUG   2280 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0159N20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153131.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*=|||||||||||||||=||* targets:2230   AGGCUUUGUUCGGUUAUUCCUAUG   2253 Target Full Sequence	2.5	Zea mays putative protein kinase superfamily protein (LOC100280200), mRNA	NA	coding protein	psRNATarget
BT055765.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*=|||||||||||||||=||* targets:2230   AGGCUUUGUUCGGUUAUUCCUAUG   2253 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0178P09 mRNA, complete cds	NA	coding protein	psRNATarget
AY109258.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*|||*||||||||||=||||| targets:734   AGGGCUUAUUCGGUUAUUUCCAUU   757 Target Full Sequence	2.5	Zea mays PCO133529 mRNA sequence	NA	coding protein	psRNATarget
NM_001154031.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||=|||||||||||*| targets:1727   AGGCCUUGUUUGGUUAUUCCCAAU   1750 Target Full Sequence	2.5	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
EU955633.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*||||||=|||||||||||*| targets:1727   AGGCCUUGUUUGGUUAUUCCCAAU   1750 Target Full Sequence	2.5	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008647691.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*|||*||||||||||=||||| targets:1867   AGGGCUUAUUCGGUUAUUUCCAUU   1890 Target Full Sequence	2.5	PREDICTED: Zea mays la protein 1 (LOC103627401), mRNA	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*=|||||||||||||||||*| targets:2124   AGGGUUUGUUCGGUUAUUCCCAAU   2147 Target Full Sequence	1.5	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
EZ108499.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   **|*||||||||||||||=||||| targets:683   UUGCCUUGUUCGGUUAUUUCCAUU   706 Target Full Sequence	1.5	TSA: Zea mays contig44158, mRNA sequence	NA	coding protein	psRNATarget
EZ101889.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   *||*||||||||||||||||||** targets:6   CGGGCUUGUUCGGUUAUUCCCAAA   29 Target Full Sequence	2.5	TSA: Zea mays contig37545, mRNA sequence	NA	coding protein	psRNATarget
XM_008658558.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||*=||||*=||||||||||||| targets:965   AGGCUUUGUCUGGUUAUUCCCAUU   988 Target Full Sequence	2.0	PREDICTED: Zea mays transcription repressor MYB5 (LOC103636205), mRNA	NA	coding protein	psRNATarget
XM_008654742.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||-||||||=|||||||||*||| targets:1727   AGG-CUUGUUUGGUUAUUCCAAUU   1749 Target Full Sequence	2.5	PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654741.2	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   |||-||||||=|||||||||*||| targets:1791   AGG-CUUGUUUGGUUAUUCCAAUU   1813 Target Full Sequence	2.5	PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY110728.1	ncRNA:24   UCCAGAACAAGCCAAUAAGGGUAA   1   **|*||||||||||||||||=||* targets:321   CAGCCUUGUUCGGUUAUUCCUAUC   344 Target Full Sequence	2.5	Zea mays CL4730_1 mRNA sequence	NA	coding protein	psRNATarget