Search result

BaseInfo

ncRNA ID novel_zma_miR9166
Species Zea mays
Class miRNA
Genome position Chr1:13442075-13442131 [-]
Reference genome RefGen_v4
Source SRR4237222
Length 25
Mature sequence(if miRNA) 1 - AAGUUGUUGCGGACUGCCAAACACU - 25
Stem-loop(if miRNA) --     C   -U    --       C   
  UGUUU GGC  UCUG  GCAGCUU UGGC
  ||||| |||  ||||  ||||||| |||C
  ACAAA CCG  AGGC  UGUUGAA ACCA
UC     -   UC    GU       A   
Stem-loop sequence UGUUUCGGCUUCUGGCAGCUUCUGGCCACCAAAAGUUGUUGCGGACUGCCAAACACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008663445.2
ncRNA:25   UCACAAACCGUCAGGCGUUGUUGAA   1
  =|*||||||||||||||||||||||
targets:383   GGCGUUUGGCAGUCCGCAACAACUU   407

0.0 PREDICTED: Zea mays VIN3-like protein 2 (IDP48), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008668942.2
ncRNA:25   UCAC--AAACCGUCAGGCGUUGUUGAA   1
  ||*|--||||*|||||=||||||||||
targets:2214   AGGGCAUUUGACAGUCUGCAACAACUU   2240

2.5 PREDICTED: Zea mays ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (si660070b03), transcript variant X1, mRNA NA coding protein psRNATarget