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BaseInfo

ncRNA ID	novel_zma_miR9163
Species	Zea mays
Class	miRNA
Genome position	Chr10:96274059-96274175 [-]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	1 - UUUGGGAUCAAACGAACAUAGCCU - 24
Stem-loop(if miRNA)	--   C         U  G    -UC      UAA           AAAUUCCCUACAA   GCU UGUUCGUUU GU CCAA   CAUAGG   UGAGGGGGAUU             G   ||| ||||||||| || ||||   ||||||   |||||||||||   CGA ACAAGCAAA UA GGUU   GUAUCC   ACUCUCUCUAA             U UC   U         C  G    UUA      CUA           CCUCUCUUAAAAC
Stem-loop sequence	GCUCUGUUCGUUUUGUGCCAAUCCAUAGGUAAUGAGGGGGAUUAAAUUCCCUACAAGUCAAAAUUCUCUCCAAUCUCUCUCAAUCCCUAUGAUUUUGGGAUCAAACGAACAUAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU975951.1	ncRNA:24   UCCGAUACAAGCAAACUAGGGUUU   1   ||||*||||||||||||||||||| targets:26   AGGCCAUGUUCGUUUGAUCCCAAA   49 Target Full Sequence	0.0	Zea mays clone 506398 mRNA sequence	NA	coding protein	psRNATarget
XM_008653299.2	ncRNA:24   UCCGAUACAAGCAAACUAGGGUUU   1   ||||*||||||||||||||||||| targets:738   AGGCCAUGUUCGUUUGAUCCCAAA   761 Target Full Sequence	0.0	PREDICTED: Zea mays protein UXT (LOC100284726), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664721.2	ncRNA:24   UCCGAUACAAGCAAACUAGGGUUU   1   ||||*||||||||||||||||||| targets:3146   AGGCCAUGUUCGUUUGAUCCCAAA   3169 Target Full Sequence	0.0	PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103641369), mRNA	NA	coding protein	psRNATarget
XM_020537815.1	ncRNA:24   UCCGAUACAAGCAAACUAGGGUUU   1   ||||*||||||||||||||||||| targets:2521   AGGCCAUGUUCGUUUGAUCCCAAA   2544 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized protein DDB_G0284459 (LOC103627942), mRNA	NA	coding protein	psRNATarget
EU959460.1	ncRNA:24   UCCGAUACAAGCAAACUAGGGUUU   1   |||=*||||||||||||||||||| targets:1160   AGGUCAUGUUCGUUUGAUCCCAAA   1183 Target Full Sequence	0.0	Zea mays clone 218223 CTD small phosphatase-like protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154990.1	ncRNA:24   UCCGAUACAAGCAAACUAGGGUUU   1   |||=*||||||||||||||||||| targets:1160   AGGUCAUGUUCGUUUGAUCCCAAA   1183 Target Full Sequence	0.0	Zea mays CTD small phosphatase-like protein (cl28155_-2), mRNA	NA	coding protein	psRNATarget
EU971368.1	ncRNA:24   UCCGAUACAAGCAAACUAGGGUUU   1   *|||*||||||||||||||||||| targets:707   UGGCCAUGUUCGUUUGAUCCCAAA   730 Target Full Sequence	0.0	Zea mays clone 363071 mitochondrial import inner membrane translocase subunit tim22 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
NM_001158128.1	ncRNA:24   UCCGAUACAAGCAAACUAGGGUUU   1   *|||*||||||||||||||||||| targets:707   UGGCCAUGUUCGUUUGAUCCCAAA   730 Target Full Sequence	0.0	Zea mays mitochondrial import inner membrane translocase subunit tim22 (LOC100285234), mRNA	NA	coding protein	psRNATarget
BT084829.2	ncRNA:24   UCCGAUACAAGCAAACUAGGGUUU   1   ||||*|||||||||||||||*||| targets:750   AGGCCAUGUUCGUUUGAUCCAAAA   773 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0189B17 mRNA, complete cds	NA	coding protein	psRNATarget
EU957826.1	ncRNA:24   UCCGAUACAAGCAAACUAGGGUUU   1   ||||*|||||=*|||||||||||| targets:1024   AGGCCAUGUUUCUUUGAUCCCAAA   1047 Target Full Sequence	2.5	Zea mays clone 1624737 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget