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BaseInfo

ncRNA ID novel_zma_miR9162
Species Zea mays
Class miRNA
Genome position Chr1:33999787-33999918 [-]
Reference genome RefGen_v4
Source SRR4237222
Length 24
Mature sequence(if miRNA) 109 - UAGGGCCUGUUCGGUUGUACCGGA - 132
Stem-loop(if miRNA) --U   G       G     A     -AC     -A     C     -    --CAUCAAAA    UA
   AGG CCUGUUC GUUGU CCGGA   GAGCC  GGAUU AUUCC AGCU          UCUA  U
   ||| ||||||| ||||| |||||   |||||  ||||| ||||| ||||          ||||  A
   UCC GGACAAG CAACA GGCCU   CUCGG  CCUAA UAAGG UCGG          AGAU  A
AAU   G       G     A     AAC     AG     U     A    CCUAAUGAAG    UA
Stem-loop sequence UAGGGCCUGUUCGGUUGUACCGGAACGAGCCAGGAUUCAUUCCAGCUCAUCAAAAUCUAUAUAAAUUAGAGAAGUAAUCCGGCUAGGAAUUAAUCCGAGGCUCCAAUCCGGAACAACGGAACAGGGCCUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163526.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||||||||
targets:107   UCCGGUACAACCGAACAGGCCCUA   130

0.0 Sequence 1190 from Patent EP2559767 NA coding protein psRNATarget
HI403065.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||||||||
targets:107   UCCGGUACAACCGAACAGGCCCUA   130

0.0 Sequence 1190 from Patent EP2074227 NA coding protein psRNATarget
LQ235195.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||||||||
targets:107   UCCGGUACAACCGAACAGGCCCUA   130

0.0 Sequence 1190 from Patent EP2985353 NA coding protein psRNATarget
XM_008658796.2
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||=
targets:2297   UCCGGUACAACCGAACAGGCCCUG   2320

1.0 PREDICTED: Zea mays hypothetical protein (LOC103636441), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658795.2
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||=
targets:2314   UCCGGUACAACCGAACAGGCCCUG   2337

1.0 PREDICTED: Zea mays hypothetical protein (LOC103636441), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235213.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:107   UCCGGUACAACCGAACAGGCCCUU   130

1.0 Sequence 1208 from Patent EP2985353 NA coding protein psRNATarget
JB163521.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:107   UCCGGUACAACCGAACAGGCCCUU   130

1.0 Sequence 1185 from Patent EP2559767 NA coding protein psRNATarget
LQ235190.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:107   UCCGGUACAACCGAACAGGCCCUU   130

1.0 Sequence 1185 from Patent EP2985353 NA coding protein psRNATarget
JB163544.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:107   UCCGGUACAACCGAACAGGCCCUU   130

1.0 Sequence 1208 from Patent EP2559767 NA coding protein psRNATarget
HI403060.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:107   UCCGGUACAACCGAACAGGCCCUU   130

1.0 Sequence 1185 from Patent EP2074227 NA coding protein psRNATarget
HI403083.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:107   UCCGGUACAACCGAACAGGCCCUU   130

1.0 Sequence 1208 from Patent EP2074227 NA coding protein psRNATarget
XM_020546999.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:485   UCCGGUACAACCGAACAGGCCCUU   508

1.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547000.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:485   UCCGGUACAACCGAACAGGCCCUU   508

1.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546998.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:485   UCCGGUACAACCGAACAGGCCCUU   508

1.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547015.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:484   UCCGGUACAACCGAACAGGCCCUU   507

1.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X18, mRNA NA coding protein psRNATarget
XM_020547006.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:484   UCCGGUACAACCGAACAGGCCCUU   507

1.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020547004.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:484   UCCGGUACAACCGAACAGGCCCUU   507

1.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020547012.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:484   UCCGGUACAACCGAACAGGCCCUU   507

1.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X15, mRNA NA coding protein psRNATarget
XM_020547005.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:484   UCCGGUACAACCGAACAGGCCCUU   507

1.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020547003.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:484   UCCGGUACAACCGAACAGGCCCUU   507

1.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020547001.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:484   UCCGGUACAACCGAACAGGCCCUU   507

1.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020547002.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||||||||*
targets:484   UCCGGUACAACCGAACAGGCCCUU   507

1.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X5, mRNA NA coding protein psRNATarget
HI403008.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||=||||||*
targets:107   UCCGGUACAACCGAACGGGCCCUU   130

2.5 Sequence 1133 from Patent EP2074227 NA coding protein psRNATarget
LQ235138.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||=||||||*
targets:107   UCCGGUACAACCGAACGGGCCCUU   130

2.5 Sequence 1133 from Patent EP2985353 NA coding protein psRNATarget
JB163469.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||=||||||*
targets:107   UCCGGUACAACCGAACGGGCCCUU   130

2.5 Sequence 1133 from Patent EP2559767 NA coding protein psRNATarget
JB166757.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||=||||||*
targets:116   UCCGGUACAACCGAACGGGCCCUU   139

2.5 Sequence 4421 from Patent EP2559767 NA coding protein psRNATarget
HI406296.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||=||||||*
targets:116   UCCGGUACAACCGAACGGGCCCUU   139

2.5 Sequence 4421 from Patent EP2074227 NA coding protein psRNATarget
LQ238426.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||=||||||*
targets:116   UCCGGUACAACCGAACGGGCCCUU   139

2.5 Sequence 4421 from Patent EP2985353 NA coding protein psRNATarget
BT041278.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||=||||||*
targets:493   UCCGGUACAACCGAACGGGCCCUU   516

2.5 Zea mays full-length cDNA clone ZM_BFb0135F17 mRNA, complete cds NA coding protein psRNATarget
XM_020549609.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||=||||||*
targets:1363   UCCGGUACAACCGAACGGGCCCUU   1386

2.5 PREDICTED: Zea mays hypothetical protein (LOC100275396), transcript variant X1, mRNA NA coding protein psRNATarget
BT055304.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||=||||||*
targets:1649   UCCGGUACAACCGAACGGGCCCUU   1672

2.5 Zea mays full-length cDNA clone ZM_BFc0163J02 mRNA, complete cds NA coding protein psRNATarget
BT054908.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||=||||||*
targets:1706   UCCGGUACAACCGAACGGGCCCUU   1729

2.5 Zea mays full-length cDNA clone ZM_BFc0162B15 mRNA, complete cds NA coding protein psRNATarget
XM_008653051.2
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||=||||||*
targets:1749   UCCGGUACAACCGAACGGGCCCUU   1772

2.5 PREDICTED: Zea mays BTB/POZ domain-containing protein (LOC100278588), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547701.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||=||||||||||||||||||||*
targets:8   UCUGGUACAACCGAACAGGCCCUU   31

1.0 PREDICTED: Zea mays uncharacterized LOC100281197 (si660042c08), transcript variant X1, mRNA NA coding protein psRNATarget
JB163580.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||||||**
targets:107   UCCGGUACAACCGAACAGGCCCGU   130

2.5 Sequence 1244 from Patent EP2559767 NA coding protein psRNATarget
LQ235249.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||||||**
targets:107   UCCGGUACAACCGAACAGGCCCGU   130

2.5 Sequence 1244 from Patent EP2985353 NA coding protein psRNATarget
HI403119.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||||||**
targets:107   UCCGGUACAACCGAACAGGCCCGU   130

2.5 Sequence 1244 from Patent EP2074227 NA coding protein psRNATarget
JB163589.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||*||=||||||||||||||||
targets:107   UCCGAUAUAACCGAACAGGCCCUA   130

1.0 Sequence 1253 from Patent EP2559767 NA coding protein psRNATarget
LQ235258.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||*||=||||||||||||||||
targets:107   UCCGAUAUAACCGAACAGGCCCUA   130

1.0 Sequence 1253 from Patent EP2985353 NA coding protein psRNATarget
HI403128.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||*||=||||||||||||||||
targets:107   UCCGAUAUAACCGAACAGGCCCUA   130

1.0 Sequence 1253 from Patent EP2074227 NA coding protein psRNATarget
HI403046.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||*||||*
targets:107   UCCGGUACAACCGAACAGACCCUU   130

2.5 Sequence 1171 from Patent EP2074227 NA coding protein psRNATarget
JB163507.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||*||||*
targets:107   UCCGGUACAACCGAACAGACCCUU   130

2.5 Sequence 1171 from Patent EP2559767 NA coding protein psRNATarget
JB163542.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||*||||*
targets:107   UCCGGUACAACCGAACAGACCCUU   130

2.5 Sequence 1206 from Patent EP2559767 NA coding protein psRNATarget
LQ235132.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||*||||*
targets:107   UCCGGUACAACCGAACAGACCCUU   130

2.5 Sequence 1127 from Patent EP2985353 NA coding protein psRNATarget
LQ235176.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||*||||*
targets:107   UCCGGUACAACCGAACAGACCCUU   130

2.5 Sequence 1171 from Patent EP2985353 NA coding protein psRNATarget
HI403081.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||*||||*
targets:107   UCCGGUACAACCGAACAGACCCUU   130

2.5 Sequence 1206 from Patent EP2074227 NA coding protein psRNATarget
JB163463.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||*||||*
targets:107   UCCGGUACAACCGAACAGACCCUU   130

2.5 Sequence 1127 from Patent EP2559767 NA coding protein psRNATarget
LQ235211.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||*||||*
targets:107   UCCGGUACAACCGAACAGACCCUU   130

2.5 Sequence 1206 from Patent EP2985353 NA coding protein psRNATarget
HI403002.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||||||||||||||||*||||*
targets:107   UCCGGUACAACCGAACAGACCCUU   130

2.5 Sequence 1127 from Patent EP2074227 NA coding protein psRNATarget
XM_020542682.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||*|||||*
targets:901   UCCGGUACAACCGAACAAGCCCUU   924

2.5 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542681.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||||||||||||||*|||||*
targets:996   UCCGGUACAACCGAACAAGCCCUU   1019

2.5 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X1, mRNA NA coding protein psRNATarget
HI405922.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||*|||||||||||||*||||
targets:107   UCCGGAACAACCGAACAGGGCCUA   130

2.5 Sequence 4047 from Patent EP2074227 NA coding protein psRNATarget
HI403022.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||*|||||||||||||*||||
targets:107   UCCGGAACAACCGAACAGGGCCUA   130

2.5 Sequence 1147 from Patent EP2074227 NA coding protein psRNATarget
JB166383.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||*|||||||||||||*||||
targets:107   UCCGGAACAACCGAACAGGGCCUA   130

2.5 Sequence 4047 from Patent EP2559767 NA coding protein psRNATarget
LQ238052.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||*|||||||||||||*||||
targets:107   UCCGGAACAACCGAACAGGGCCUA   130

2.5 Sequence 4047 from Patent EP2985353 NA coding protein psRNATarget
LQ235152.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||*|||||||||||||*||||
targets:107   UCCGGAACAACCGAACAGGGCCUA   130

2.5 Sequence 1147 from Patent EP2985353 NA coding protein psRNATarget
JB163483.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||*|||||||||||||*||||
targets:107   UCCGGAACAACCGAACAGGGCCUA   130

2.5 Sequence 1147 from Patent EP2559767 NA coding protein psRNATarget
HI407312.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||*|||||||||||||*||||
targets:119   UCCGGAACAACCGAACAGGGCCUA   142

2.5 Sequence 5437 from Patent EP2074227 NA coding protein psRNATarget
JB167773.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||*|||||||||||||*||||
targets:119   UCCGGAACAACCGAACAGGGCCUA   142

2.5 Sequence 5437 from Patent EP2559767 NA coding protein psRNATarget
LQ239442.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||||*|||||||||||||*||||
targets:119   UCCGGAACAACCGAACAGGGCCUA   142

2.5 Sequence 5437 from Patent EP2985353 NA coding protein psRNATarget
XM_008658190.2
ncRNA:23   GGCCAUGUUGGCUUGUCCGGGAU   1
  ||||*|||||||||||||*||||
targets:1   CCGGAACAACCGAACAGGGCCUA   23

2.5 PREDICTED: Zea mays probable calcium-binding protein CML9 (LOC103635808), mRNA NA coding protein psRNATarget
DQ246154.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||**||*||||||||||||||||
targets:604   UCCACUAGAACCGAACAGGCCCUA   627

1.0 Zea mays clone 6992 mRNA sequence NA coding protein psRNATarget
EU969124.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  |||**||*||||||||||||||||
targets:16   UCCACUAGAACCGAACAGGCCCUA   39

1.0 Zea mays clone 326178 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020551773.1
ncRNA:24   AGGCCAUGUUGGCUUGUCCGGGAU   1
  ||||**|||||||||||||*||||
targets:2175   UCCGAAACAACCGAACAGGGCCUA   2198

2.5 PREDICTED: Zea mays putative disease resistance protein RGA1 (LOC109945454), mRNA NA coding protein psRNATarget
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