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BaseInfo

ncRNA ID	novel_zma_miR9161
Species	Zea mays
Class	miRNA
Genome position	Chr1:35723273-35723385 [-]
Reference genome	RefGen_v4
Source	SRR4237222;SRR4237226
Length	21
Mature sequence(if miRNA)	93 - UUGUUUGGAAUUAUAAUCUGC - 113
Stem-loop(if miRNA)	--                      C                C         A       UUGUUUGGAAUUAUAAUCUGCC AGAUUAUAUAAUCUAA UUAUUUUGA CUAGC   |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||A   AACAAACCUUAAUAUUAGACGG UUUAAUAUAUUAGAUU AAUAAAACU GAUUC CA                      A                C         C
Stem-loop sequence	UUGUUUGGAAUUAUAAUCUGCCCAGAUUAUAUAAUCUAACUUAUUUUGAACUAGCACUUAGCUCAAAAUAACUUAGAUUAUAUAAUUUAGGCAGAUUAUAAUUCCAAACAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY107155.1	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   ||||||||||||||||||||| targets:623   GCAGAUUAUAAUUCCAAACAA   643 Target Full Sequence	0.0	Zea mays PCO068737 mRNA sequence	NA	coding protein	psRNATarget
XM_008669523.2	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   *|||||||||||||||||||| targets:2124   ACAGAUUAUAAUUCCAAACAA   2144 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (LOC100278420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669523.2	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   *|||||||||||*|||||||| targets:2181   ACAGAUUAUAAUCCCAAACAA   2201 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100278420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680041.2	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   |=|||||||||||=||||||| targets:31   GUAGAUUAUAAUUUCAAACAA   51 Target Full Sequence	1.5	PREDICTED: Zea mays cytochrome P450 CYP71D312 (LOC103653077), mRNA	NA	coding protein	psRNATarget
XM_008648079.2	ncRNA:21   CG-UCUAAUAUUAAGGUUUGUU   1   ||-||||||||||||||||||| targets:2010   GCUAGAUUAUAAUUCCAAACAA   2031 Target Full Sequence	2.0	PREDICTED: Zea mays galactoside 2-alpha-L-fucosyltransferase (LOC103627780), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ089583.1	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   ||||||||||||*|||||||| targets:20   GCAGAUUAUAAUCCCAAACAA   40 Target Full Sequence	1.5	TSA: Zea mays contig25229, mRNA sequence	NA	coding protein	psRNATarget
XM_008657785.2	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   *=|||||||||||=||||||| targets:2358   AUAGAUUAUAAUUUCAAACAA   2378 Target Full Sequence	1.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 (LOC103635294), mRNA	NA	coding protein	psRNATarget
XM_008682894.2	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   *|||||||||||*|||||||| targets:5061   ACAGAUUAUAAUCCCAAACAA   5081 Target Full Sequence	1.5	PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (si618080f12(37)), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020546835.1	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   *|||||||||||*|||||||| targets:982   CCAGAUUAUAAUCCCAAACAA   1002 Target Full Sequence	1.5	PREDICTED: Zea mays WAT1-related protein At5g64700-like (LOC109943524), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT062324.1	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   *|||||||||||*|||||||| targets:944   UCAGAUUAUAAUCCCAAACAA   964 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0280F21 mRNA, complete cds	NA	coding protein	psRNATarget
EZ064625.1	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   *=||||||||||*|||||||| targets:21   AUAGAUUAUAAUCCCAAACAA   41 Target Full Sequence	1.5	TSA: Zea mays contig00257, mRNA sequence	NA	coding protein	psRNATarget
EZ078154.1	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   *=||||||||||*|||||||| targets:60   AUAGAUUAUAAUCCCAAACAA   80 Target Full Sequence	1.5	TSA: Zea mays contig13793, mRNA sequence	NA	coding protein	psRNATarget
XM_008660979.2	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   **||||||||||*|||||||* targets:1837   AAAGAUUAUAAUACCAAACAU   1857 Target Full Sequence	2.5	PREDICTED: Zea mays CHD3-type chromatin-remodeling factor PICKLE (LOC103637982), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660980.2	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   **||||||||||*|||||||* targets:1713   AAAGAUUAUAAUACCAAACAU   1733 Target Full Sequence	2.5	PREDICTED: Zea mays CHD3-type chromatin-remodeling factor PICKLE (LOC103637982), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660981.2	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   **||||||||||*|||||||* targets:1704   AAAGAUUAUAAUACCAAACAU   1724 Target Full Sequence	2.5	PREDICTED: Zea mays CHD3-type chromatin-remodeling factor PICKLE (LOC103637982), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ074385.1	ncRNA:21   CGUCUAAUAUUAAGGUUUGUU   1   *||*||||*|||||||||||| targets:17   ACACAUUAGAAUUCCAAACAA   37 Target Full Sequence	2.5	TSA: Zea mays contig10022, mRNA sequence	NA	coding protein	psRNATarget