Search result

BaseInfo

ncRNA ID novel_zma_miR9150
Species Zea mays
Class miRNA
Genome position Chr1:154952626-154952669 [-]
Reference genome RefGen_v4
Source SRR4237222
Length 21
Mature sequence(if miRNA) 1 - UCCUGAUGUGCGCAGUUGGUC - 21
Stem-loop(if miRNA) --A    A    C        A
   CAAC GUGC AUAUUAGG U
   |||| |||| |||||||| G
   GUUG CGCG UGUAGUCC U
CUG    A    -        U
Stem-loop sequence ACAACAGUGCCAUAUUAGGAUGUUCCUGAUGUGCGCAGUUGGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ106785.1
ncRNA:21   CUGGUUGACGCGUGUAGUCCU   1
  |||||||||||||||||||||
targets:10   GACCAACUGCGCACAUCAGGA   30

0.0 TSA: Zea mays contig42443, mRNA sequence NA coding protein psRNATarget
EZ064540.1
ncRNA:21   CUGGUUGACGCGUGUAGUCCU   1
  |||||||||||||||||||||
targets:11   GACCAACUGCGCACAUCAGGA   31

0.0 TSA: Zea mays contig00172, mRNA sequence NA coding protein psRNATarget
XM_020552975.1
ncRNA:21   CUGGUUGACGCGUGUAGUCCU   1
  |||||||||||||||||||||
targets:2730   GACCAACUGCGCACAUCAGGA   2750

0.0 PREDICTED: Zea mays hypothetical protein (cl23538_1a), transcript variant X3, mRNA NA coding protein psRNATarget