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BaseInfo

ncRNA ID novel_zma_miR9144
Species Zea mays
Class miRNA
Genome position Chr1:217157954-217158124 [-]
Reference genome RefGen_v4
Source SRR4237222
Length 24
Mature sequence(if miRNA) 1 - AUUAGUCGCUAGAAACCAAACACC - 24
Stem-loop(if miRNA) --              A          A   AC             C  G       C       C       C C         
  UGUUUGGUUUUUAG GACUAAUUUU AGU  CUUCAUUUUAUUC AU UUAGUCU UAAAUUG CAAAUAU A AACUAAAAUA
  |||||||||||||| |||||||||| |||  ||||||||||||| || ||||||| ||||||| ||||||| | |||||||||G
  ACAAACCAAAGAUC CUGAUUAAAA UCA  GAGGUAAAAUAAG UA AAUCAGA AUUUGAC GUUUAUG U UUGAUUUUGA
CC              G          A   GU             A  A       U       A       C U         
Stem-loop sequence UGUUUGGUUUUUAGAGACUAAUUUUAAGUACCUUCAUUUUAUUCCAUGUUAGUCUCUAAAUUGCCAAAUAUCACAACUAAAAUAGAGUUUUAGUUUUCGUAUUUGACAGUUUAUAGACUAAAAUAGAAUAAAAUGGAGUGACUAAAAAUUAGUCGCUAGAAACCAAACACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163556.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||=|||||||
targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1220 from Patent EP2559767 NA coding protein psRNATarget
LQ235225.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||=|||||||
targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1220 from Patent EP2985353 NA coding protein psRNATarget
HI403095.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||=|||||||
targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1220 from Patent EP2074227 NA coding protein psRNATarget
JB163418.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||=|||||||
targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1082 from Patent EP2559767 NA coding protein psRNATarget
HI402957.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||=|||||||
targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1082 from Patent EP2074227 NA coding protein psRNATarget
LQ235087.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||=|||||||
targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1082 from Patent EP2985353 NA coding protein psRNATarget
EZ060524.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||=|||||||
targets:43   GGUGUUUGGUUUCUAGUGACUAAU   66

1.5 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
BT018699.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||=|||||||||||
targets:1233   GGUGUUUGGUUUUUAGCGACUAAU   1256

1.5 Zea mays clone EL01N0514H05.d mRNA sequence NA coding protein psRNATarget
HI403047.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:59   GGUGUUUGGUUUCUAGGGACUAAU   82

1.5 Sequence 1172 from Patent EP2074227 NA coding protein psRNATarget
JB163508.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:59   GGUGUUUGGUUUCUAGGGACUAAU   82

1.5 Sequence 1172 from Patent EP2559767 NA coding protein psRNATarget
LQ235177.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:59   GGUGUUUGGUUUCUAGGGACUAAU   82

1.5 Sequence 1172 from Patent EP2985353 NA coding protein psRNATarget
JB163502.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

1.5 Sequence 1166 from Patent EP2559767 NA coding protein psRNATarget
HI403055.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

1.5 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
HI403041.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

1.5 Sequence 1166 from Patent EP2074227 NA coding protein psRNATarget
JB163516.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

1.5 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
LQ235182.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

1.5 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
LQ235185.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

1.5 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
JB163513.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

1.5 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
HI403052.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

1.5 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
LQ235171.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

1.5 Sequence 1166 from Patent EP2985353 NA coding protein psRNATarget
JB163501.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:3   GGUGUUUGGUUUCUAGGGACUAAU   26

1.5 Sequence 1165 from Patent EP2559767 NA coding protein psRNATarget
LQ235170.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:3   GGUGUUUGGUUUCUAGGGACUAAU   26

1.5 Sequence 1165 from Patent EP2985353 NA coding protein psRNATarget
HI403040.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:3   GGUGUUUGGUUUCUAGGGACUAAU   26

1.5 Sequence 1165 from Patent EP2074227 NA coding protein psRNATarget
EU942443.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:464   GGUGUUUGGUUUCUAGGGACUAAU   487

1.5 Zea mays clone 1501876 mRNA sequence NA coding protein psRNATarget
EZ052166.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:751   GGUGUUUGGUUUCUAGGGACUAAU   774

1.5 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:551   GGUGUUUGGUUUCUAGGGACUAAU   574

1.5 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:814   GGUGUUUGGUUUCUAGGGACUAAU   837

1.5 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:814   GGUGUUUGGUUUCUAGGGACUAAU   837

1.5 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
NM_001313850.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1138   GGUGUUUGGUUUCUAGGGACUAAU   1161

1.5 Zea mays voltage-gated potassium channel beta subunit (LOC100282429), mRNA NA coding protein psRNATarget
BT088358.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1138   GGUGUUUGGUUUCUAGGGACUAAU   1161

1.5 Zea mays full-length cDNA clone ZM_BFc0155C19 mRNA, complete cds NA coding protein psRNATarget
XM_008650759.2
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1136   GGUGUUUGGUUUCUAGGGACUAAU   1159

1.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008650758.2
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1145   GGUGUUUGGUUUCUAGGGACUAAU   1168

1.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008650753.2
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1148   GGUGUUUGGUUUCUAGGGACUAAU   1171

1.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650754.2
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1154   GGUGUUUGGUUUCUAGGGACUAAU   1177

1.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008667360.2
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1145   GGUGUUUGGUUUCUAGGGACUAAU   1168

1.5 PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:971   GGUGUUUGGUUUCUAGGGACUAAU   994

1.5 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020543841.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:919   GGUGUUUGGUUUCUAGGGACUAAU   942

1.5 PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA NA coding protein psRNATarget
EU956227.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1241   GGUGUUUGGUUUCUAGGGACUAAU   1264

1.5 Zea mays clone 1559264 mRNA sequence NA coding protein psRNATarget
BT085047.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1192   GGUGUUUGGUUUCUAGGGACUAAU   1215

1.5 Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds NA coding protein psRNATarget
XM_020547858.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1540   GGUGUUUGGUUUCUAGGGACUAAU   1563

1.5 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020542419.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:2143   GGUGUUUGGUUUCUAGGGACUAAU   2166

1.5 PREDICTED: Zea mays ADP,ATP carrier protein 2, chloroplastic (LOC103637385), mRNA NA coding protein psRNATarget
EU956677.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:2011   GGUGUUUGGUUUCUAGAGACUAAU   2034

1.5 Zea mays clone 1570443 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020550311.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:2446   GGUGUUUGGUUUCUAGGGACUAAU   2469

1.5 PREDICTED: Zea mays zinc finger CCCH domain-containing protein 67-like (LOC103650585), mRNA NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||||||||||||||*|||||||
targets:1921   GGUGUUUGGUUUCUAGGGACUAAU   1944

1.5 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
JB163456.1
ncRNA:24   CC-ACAAACCAAAGAUCGCUGAUUA   1
  ||-||||||||||||||=|||||||
targets:2   GGAUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1120 from Patent EP2559767 NA coding protein psRNATarget
LQ235125.1
ncRNA:24   CC-ACAAACCAAAGAUCGCUGAUUA   1
  ||-||||||||||||||=|||||||
targets:2   GGAUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1120 from Patent EP2985353 NA coding protein psRNATarget
HI402995.1
ncRNA:24   CC-ACAAACCAAAGAUCGCUGAUUA   1
  ||-||||||||||||||=|||||||
targets:2   GGAUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1120 from Patent EP2074227 NA coding protein psRNATarget
EU941753.1
ncRNA:24   CC-ACAAACCAAAGAUCGCUGAUUA   1
  ||-||||||||||||||*|||||||
targets:3   GGAUGUUUGGUUUCUAGGGACUAAU   27

1.5 Zea mays clone 1469712 mRNA sequence NA coding protein psRNATarget
BT018349.1
ncRNA:24   CC-ACAAACCAAAGAUCGCUGAUUA   1
  ||-||||||||||||||*|||||||
targets:558   GGAUGUUUGGUUUCUAGGGACUAAU   582

1.5 Zea mays clone EL01T0403E10.c mRNA sequence NA coding protein psRNATarget
XM_020546796.1
ncRNA:24   CC-ACAAACCAAAGAUCGCUGAUUA   1
  ||-||||||||||||||*|||||||
targets:3402   GGAUGUUUGGUUUCUAGGGACUAAU   3426

1.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546795.1
ncRNA:24   CC-ACAAACCAAAGAUCGCUGAUUA   1
  ||-||||||||||||||*|||||||
targets:3477   GGAUGUUUGGUUUCUAGGGACUAAU   3501

1.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546794.1
ncRNA:24   CC-ACAAACCAAAGAUCGCUGAUUA   1
  ||-||||||||||||||*|||||||
targets:3527   GGAUGUUUGGUUUCUAGGGACUAAU   3551

1.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546793.1
ncRNA:24   CC-ACAAACCAAAGAUCGCUGAUUA   1
  ||-||||||||||||||*|||||||
targets:3564   GGAUGUUUGGUUUCUAGGGACUAAU   3588

1.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA NA coding protein psRNATarget
EU946945.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  *||||||*||||||||=|||||||
targets:568   AGUGUUUAGUUUCUAGUGACUAAU   591

2.5 Zea mays clone 325236 mRNA sequence NA coding protein psRNATarget
JB163511.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  |*||||||||||||||*|||||||
targets:1   GAUGUUUGGUUUCUAGGGACUAAU   24

1.5 Sequence 1175 from Patent EP2559767 NA coding protein psRNATarget
LQ235180.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  |*||||||||||||||*|||||||
targets:1   GAUGUUUGGUUUCUAGGGACUAAU   24

1.5 Sequence 1175 from Patent EP2985353 NA coding protein psRNATarget
HI403050.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  |*||||||||||||||*|||||||
targets:1   GAUGUUUGGUUUCUAGGGACUAAU   24

1.5 Sequence 1175 from Patent EP2074227 NA coding protein psRNATarget
BT065747.2
ncRNA:24   CCA---CAAACCAAAGAUCGCUGAUUA   1
  |||---|||||||||||||*|||||||
targets:760   GGUCAUGUUUGGUUUCUAGGGACUAAU   786

1.5 Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds NA coding protein psRNATarget
BT055601.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||*|||||||||||*|||||||
targets:786   GGUGCUUGGUUUCUAGGGACUAAU   809

1.5 Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds NA coding protein psRNATarget
NM_001153051.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  ||||*|||||||||||*|||||||
targets:786   GGUGCUUGGUUUCUAGGGACUAAU   809

1.5 Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA NA coding protein psRNATarget
BT053999.2
ncRNA:24   CCA---CAAACCAAAGAUCGCUGAUUA   1
  |||---|||||||||||||*|||||||
targets:1930   GGUCAUGUUUGGUUUCUAGGGACUAAU   1956

1.5 Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds NA coding protein psRNATarget
NM_001152323.1
ncRNA:24   CCA---CAAACCAAAGAUCGCUGAUUA   1
  |||---|||||||||||||*|||||||
targets:1930   GGUCAUGUUUGGUUUCUAGGGACUAAU   1956

1.5 Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA NA coding protein psRNATarget
NM_001154575.2
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  |*||||||||||||||*||||||*
targets:1860   GAUGUUUGGUUUCUAGGGACUAAA   1883

2.5 Zea mays uncharacterized LOC100281656 (si605087c09), mRNA NA coding protein psRNATarget
EU957463.1
ncRNA:24   CCACAAACCAAAGAUCGCUGAUUA   1
  |*||||||||||||||*||||||*
targets:1861   GAUGUUUGGUUUCUAGGGACUAAA   1884

2.5 Zea mays clone 1593330 selenium-binding protein-like mRNA, complete cds NA coding protein psRNATarget
AY104678.1
ncRNA:24   CC-ACAAACCAAAGAUCGCUGAUUA   1
  ||-|||||*||||||||*|||||||
targets:1467   GGAUGUUUUGUUUCUAGAGACUAAU   1491

2.5 Zea mays PCO081661 mRNA sequence NA coding protein psRNATarget
NM_001111805.2
ncRNA:24   CC-ACAAACCAAAGAUCGCUGAUUA   1
  ||-|||||*||||||||*|||||||
targets:1478   GGAUGUUUUGUUUCUAGAGACUAAU   1502

2.5 Zea mays uncharacterized LOC542191 (TIDP2941), mRNA NA coding protein psRNATarget
LQ235191.1
ncRNA:23   CAC-AAACCAAAGAUCGCUGAUUA   1
  |||-|||*||||||||*|||||||
targets:1   GUGGUUUAGUUUCUAGGGACUAAU   24

2.5 Sequence 1186 from Patent EP2985353 NA coding protein psRNATarget
HI403061.1
ncRNA:23   CAC-AAACCAAAGAUCGCUGAUUA   1
  |||-|||*||||||||*|||||||
targets:1   GUGGUUUAGUUUCUAGGGACUAAU   24

2.5 Sequence 1186 from Patent EP2074227 NA coding protein psRNATarget
JB163522.1
ncRNA:23   CAC-AAACCAAAGAUCGCUGAUUA   1
  |||-|||*||||||||*|||||||
targets:1   GUGGUUUAGUUUCUAGGGACUAAU   24

2.5 Sequence 1186 from Patent EP2559767 NA coding protein psRNATarget
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