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BaseInfo

ncRNA ID	novel_zma_miR9140
Species	Zea mays
Class	miRNA
Genome position	Chr1:281392268-281392414 [-]
Reference genome	RefGen_v4
Source	SRR4237222;SRR5100255
Length	24
Mature sequence(if miRNA)	1 - ACUGGACUGUCCGGUGCACCCGAC - 24
Stem-loop(if miRNA)	--A   G         U        UG         -          G  --------------      U --  A    UG    GGG GCACCGGAC GUCCGGUG  CACCGGACA UGUCCGGUGC CC              AACGGC C  CC GAUC  C    ||| ||||||||| ||||||||  ||||||||| |||||||||| ||              |||||| |  || ||||    CCC CGUGGCCUG CAGGUCAC  GUGGCCUGU ACAGGCCACG GG              UUGUCG G  GG CUGG  A CAG   A         U        GU         C          -  CUAAAGAAAGGAAU      C UC  -    CA
Stem-loop sequence	AGGGGGCACCGGACUGUCCGGUGUGCACCGGACAUGUCCGGUGCGCCAACGGCUCCCAGAUCUGCAACGGUCGGCUGCGCUGUUUAAGGAAAGAAAUCGGGCACCGGACACUGUCCGGUGUGCACUGGACUGUCCGGUGCACCCGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT065201.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   |||||||||||||||||||||=|| targets:584   GUCGGGUGCACCGGACAGUCCGGU   607 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   |||||||||||||||||||||=|| targets:136   GUCGGGUGCACCGGACAGUCCGGU   159 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGUCA   1   ||||---|||||||||||||||||=|| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	1.5	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGUCA   1   ||||---|||||||||||||||||=|| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	1.5	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGUCA   1   ||||---|||||||||||||||||=|| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	1.5	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   ||||||*||||||||||||||=|| targets:495   GUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   ||||||*||||||||||||||=|| targets:495   GUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   |*=||||||||||||||||||=|| targets:587   GAUGGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	1.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CAGC-------CCACGUGGCCUGUCAGGUCA   1   ||=|-------|||||||||||||||||=|| targets:814   GUUGCUCCGCUGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	1.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   |*=||||||||||||||||||=|| targets:587   GAUGGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CAGC-------CCACGUGGCCUGUCAGGUCA   1   ||=|-------|||||||||||||||||=|| targets:814   GUUGCUCCGCUGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   |*|*|||||||||||||||||=|| targets:828   GCCUGGUGCACCGGACAGUCCGGU   851 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   CAGC--------CCACGUGGCCUGUCAGGUCA   1   ||||--------|||||||||||||||||=|| targets:753   GUCGAGUGCCCUGGUGCACCGGACAGUCCGGU   784 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   *|||||*||||||||||||||=|| targets:483   AUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   *|||||*||||||||||||||=|| targets:483   AUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   *|||||*||||||||||||||=|| targets:4377   AUCGGGCGCACCGGACAGUCCGGU   4400 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   |||*||*||||||||||||||=|| targets:374   GUCUGGCGCACCGGACAGUCCGGU   397 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGUCA   1   ||||---||*||||||||||||||=|| targets:500   GUCGCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGUCA   1   ||||---||*||||||||||||||=|| targets:500   GUCGCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   **||||*||||||||||||||=|| targets:330   CACGGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   **||||*||||||||||||||=|| targets:330   CACGGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
EZ066204.1	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGUCA   1   ||||---||*||||||||||||||=|| targets:86   GUCGCAUGGCGCACCGGACAGUCCGGU   112 Target Full Sequence	2.5	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget
EZ108756.1	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGUCA   1   ||||---||*||||||||||||||=|| targets:141   GUCGAUGGGCGCACCGGACAGUCCGGU   167 Target Full Sequence	2.5	TSA: Zea mays contig44415, mRNA sequence	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGUCA   1   ||||---||*||||||||||||||=|| targets:470   GUCGCAUGGCGCACCGGACAGUCCGGU   496 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   |*|*||*||||||||||||||=|| targets:778   GCCUGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   |*|*||*||||||||||||||=|| targets:778   GCCUGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CAGC---CCACGUGGCCUGUCAGGUCA   1   ||||---||*||||||||||||||=|| targets:2535   GUCGACUGGCGCACCGGACAGUCCGGU   2561 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
NM_001175661.1	ncRNA:24   CAG-C--CCACGUGGCCUGUCAGGUCA   1   |||-|--||||||||||||*||||||| targets:1075   GUCCGAUGGUGCACCGGACUGUCCAGU   1101 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382977 (LOC100382977), mRNA	NA	coding protein	psRNATarget
BT065862.1	ncRNA:24   CAG-C--CCACGUGGCCUGUCAGGUCA   1   |||-|--||||||||||||*||||||| targets:1075   GUCCGAUGGUGCACCGGACUGUCCAGU   1101 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0155J05 mRNA, complete cds	NA	coding protein	psRNATarget
HI409990.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   ||--||||||||||||||||||*| targets:33   GU--GGUGCACCGGACAGUCCAAU   54 Target Full Sequence	1.5	Sequence 8115 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242120.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   ||--||||||||||||||||||*| targets:33   GU--GGUGCACCGGACAGUCCAAU   54 Target Full Sequence	1.5	Sequence 8115 from Patent EP2985353	NA	coding protein	psRNATarget
JB170451.1	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   ||--||||||||||||||||||*| targets:33   GU--GGUGCACCGGACAGUCCAAU   54 Target Full Sequence	1.5	Sequence 8115 from Patent EP2559767	NA	coding protein	psRNATarget
EZ109126.1	ncRNA:24   CAGC--CCACGUGGCCUGUCAGGUCA   1   *|=|--||*||||||||||||||=|| targets:171   UUUGAUGGCGCACCGGACAGUCCGGU   196 Target Full Sequence	2.5	TSA: Zea mays contig44785, mRNA sequence	NA	coding protein	psRNATarget
XM_008662326.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   **|*|||||||||||||*|||||| targets:1601   CCCUGGUGCACCGGACAAUCCAGU   1624 Target Full Sequence	1.5	PREDICTED: Zea mays NAC domain-containing protein 37 (LOC103639595), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008662324.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   **|*|||||||||||||*|||||| targets:1607   CCCUGGUGCACCGGACAAUCCAGU   1630 Target Full Sequence	1.5	PREDICTED: Zea mays NAC domain-containing protein 37 (LOC103639595), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008662328.2	ncRNA:24   CAGCCCACGUGGCCUGUCAGGUCA   1   **|*|||||||||||||*|||||| targets:1711   CCCUGGUGCACCGGACAAUCCAGU   1734 Target Full Sequence	1.5	PREDICTED: Zea mays NAC domain-containing protein 37 (LOC103639595), transcript variant X3, mRNA	NA	coding protein	psRNATarget