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BaseInfo

ncRNA ID	novel_zma_miR9136
Species	Zea mays
Class	miRNA
Genome position	Chr1:293148238-293148326 [-]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	66 - CACCGGACUGUCUGGUGAGGCACC - 89
Stem-loop(if miRNA)	--        U        AG   -     ------ A     C   G   CACCGGAC GUCUGGUG  GCA CCAGA      C GUCUG GCA U   |||||||| ||||||||  ||| |||||      | ||||| |||   GUGGCCUG CAGGCCAC  UGU GGUCU      G CAGAC CGU G GU        U        GA   C     CUCGCG A     A   A
Stem-loop sequence	CACCGGACUGUCUGGUGAGGCACCAGACAGUCUGCGCAGUGAUGCACAGACAGGCGCUCUCUGGCUGUAGCACCGGACUGUCCGGUGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT061123.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |||||||||||=|||||||||||| targets:354   GGUGCCUCACCGGACAGUCCGGUG   377 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |||||||||||=|||||||||||| targets:1470   GGUGCCUCACCGGACAGUCCGGUG   1493 Target Full Sequence	1.5	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |||||=|||||=|||||||||||| targets:681   GGUGCUUCACCGGACAGUCCGGUG   704 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
U41079.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   ||||*||||||=|||||||||||| targets:25   GGUGACUCACCGGACAGUCCGGUG   48 Target Full Sequence	1.5	Zea mays copia-type retroelement PREM-2, partial sequence	NA	coding protein	psRNATarget
EZ101438.1	ncRNA:24   CCACG-GAGUGGUCUGUCAGGCCAC   1   |||||-|*||||||||||||||||| targets:36   GGUGCACGCACCAGACAGUCCGGUG   60 Target Full Sequence	3.0	TSA: Zea mays contig37094, mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||=||||||=|||||||||||| targets:4590   GUUGUCUCACCGGACAGUCCGGUG   4613 Target Full Sequence	1.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   ||||*|*||||||||||||||||| targets:484   GGUGGCGCACCAGACAGUCCGGUG   507 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |||||**||||||||||||||||| targets:726   GGUGCACCACCAGACAGUCCGGUG   749 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
JB170393.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   ||||*|*||||=|||||||||||| targets:30   GGUGGCCCACCGGACAGUCCGGUG   53 Target Full Sequence	2.5	Sequence 8057 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242062.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   ||||*|*||||=|||||||||||| targets:30   GGUGGCCCACCGGACAGUCCGGUG   53 Target Full Sequence	2.5	Sequence 8057 from Patent EP2985353	NA	coding protein	psRNATarget
HI409932.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   ||||*|*||||=|||||||||||| targets:30   GGUGGCCCACCGGACAGUCCGGUG   53 Target Full Sequence	2.5	Sequence 8057 from Patent EP2074227	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   ||||*|*||||=|||||||||||| targets:95   GGUGGCACACCGGACAGUCCGGUG   118 Target Full Sequence	2.5	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||||=|||||||||||| targets:581   GUUGGCUCACCGGACAGUCCGGUG   604 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|***|*||||=|||||||||||| targets:600   CGGUGCACACCGGACAGUCCGGUG   623 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||||=|||||||||||| targets:717   GUUGGCUCACCGGACAGUCCGGUG   740 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|***|*||||=|||||||||||| targets:736   CGGUGCACACCGGACAGUCCGGUG   759 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||||=|||||||||||| targets:717   GUUGGCUCACCGGACAGUCCGGUG   740 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|***|*||||=|||||||||||| targets:736   CGGUGCACACCGGACAGUCCGGUG   759 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   ||||*|*||||=|||||||||||| targets:798   GGUGGCACACCGGACAGUCCGGUG   821 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*|*||||=|||||||||||| targets:696   GCUGGCACACCGGACAGUCCGGUG   719 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   **||*|*||||=|||||||||||| targets:474   CAUGGCGCACCGGACAGUCCGGUG   497 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||||=|||||||||||| targets:688   GUUGGCUCACCGGACAGUCCGGUG   711 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||||=|||||||||||| targets:688   GUUGGCUCACCGGACAGUCCGGUG   711 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||||=|||||||||||| targets:695   GUUGGCUCACCGGACAGUCCGGUG   718 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*|*||||=|||||||||||| targets:600   GUUGGCGCACCGGACAGUCCGGUG   623 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|***|*||||=|||||||||||| targets:714   CGGUGCACACCGGACAGUCCGGUG   737 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||||=|||||||||||| targets:695   GUUGGCUCACCGGACAGUCCGGUG   718 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*|*||||=|||||||||||| targets:600   GUUGGCGCACCGGACAGUCCGGUG   623 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|***|*||||=|||||||||||| targets:714   CGGUGCACACCGGACAGUCCGGUG   737 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||||=|||||||||||| targets:678   GUUGGCUCACCGGACAGUCCGGUG   701 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|***|*||||=|||||||||||| targets:697   CGGUGCACACCGGACAGUCCGGUG   720 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||||=|||||||||||| targets:678   GUUGGCUCACCGGACAGUCCGGUG   701 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|***|*||||=|||||||||||| targets:697   CGGUGCACACCGGACAGUCCGGUG   720 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||||=|||||||||||| targets:542   GUUGGCUCACCGGACAGUCCGGUG   565 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|***|*||||=|||||||||||| targets:561   CGGUGCACACCGGACAGUCCGGUG   584 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||||=|||||||||||| targets:542   GUUGGCUCACCGGACAGUCCGGUG   565 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|***|*||||=|||||||||||| targets:561   CGGUGCACACCGGACAGUCCGGUG   584 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||||=|||||||||||| targets:390   GUUGGCUCACCGGACAGUCCGGUG   413 Target Full Sequence	1.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|***|*||||=|||||||||||| targets:409   CGGUGCACACCGGACAGUCCGGUG   432 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||||=|||||||||||| targets:2750   GUUGGCUCACCGGACAGUCCGGUG   2773 Target Full Sequence	1.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   **||*|*||||=|||||||||||| targets:2539   ACUGGCGCACCGGACAGUCCGGUG   2562 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
HI410005.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|||*|*||||||||||||||||| targets:4   AGUGGCGCACCAGACAGUCCGGUG   27 Target Full Sequence	1.0	Sequence 8130 from Patent EP2074227	NA	coding protein	psRNATarget
JB170466.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|||*|*||||||||||||||||| targets:4   AGUGGCGCACCAGACAGUCCGGUG   27 Target Full Sequence	1.0	Sequence 8130 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242135.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|||*|*||||||||||||||||| targets:4   AGUGGCGCACCAGACAGUCCGGUG   27 Target Full Sequence	1.0	Sequence 8130 from Patent EP2985353	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   CCA-CGGAGUGGUCUGUCAGGCCAC   1   |||-|=|*||||=|||||||||||| targets:813   GGUUGUCCCACCGGACAGUCCGGUG   837 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CC-ACGGAGUGGUCUGUCAGGCCAC   1   ||-||*||||=|=|||||||||||| targets:697   GGAUGACUCAUCGGACAGUCCGGUG   721 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||=|=|||||||||||| targets:621   GUUGGCUCAUCGGACAGUCCGGUG   644 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|||*|*||||=|||||||||||| targets:490   AGUGGCGCACCGGACAGUCCGGUG   513 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CC-ACGGAGUGGUCUGUCAGGCCAC   1   ||-||*||||=|=|||||||||||| targets:697   GGAUGACUCAUCGGACAGUCCGGUG   721 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*||||=|=|||||||||||| targets:621   GUUGGCUCAUCGGACAGUCCGGUG   644 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|||*|*||||=|||||||||||| targets:490   AGUGGCGCACCGGACAGUCCGGUG   513 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   **||*|*||||=|||||||||||| targets:11   ACUGGCACACCGGACAGUCCGGUG   34 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   **||*|*||||=|||||||||||| targets:11   ACUGGCACACCGGACAGUCCGGUG   34 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   **||*|*||||=|||||||||||| targets:11   ACUGGCACACCGGACAGUCCGGUG   34 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
EU943461.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   *|****|||||||||*|||||||| targets:1270   AGAAGAUCACCAGACUGUCCGGUG   1293 Target Full Sequence	2.5	Zea mays clone 1624403 mRNA sequence	NA	coding protein	psRNATarget
EZ109126.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   |*||*|*||||=|||||||||||| targets:174   GAUGGCGCACCGGACAGUCCGGUG   197 Target Full Sequence	2.5	TSA: Zea mays contig44785, mRNA sequence	NA	coding protein	psRNATarget
EZ066204.1	ncRNA:24   CCACGGAGUGGUCUGUCAGGCCAC   1   **||*|*||||=|||||||||||| targets:90   CAUGGCGCACCGGACAGUCCGGUG   113 Target Full Sequence	2.5	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget