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BaseInfo

ncRNA ID novel_zma_miR9135
Species Zea mays
Class miRNA
Genome position Chr3:101547303-101547383 [-]
Reference genome RefGen_v4
Source SRR1997865
Length 24
Mature sequence(if miRNA) 58 - ACUAUGUGUAGAAACCUAAGUGGC - 81
Stem-loop(if miRNA) --        U         AG   C   AACA      CA
  ACUAUGUG AGAAACCUA  UGG CUA    UGAAAU  U
  |||||||| |||||||||  ||| |||    ||||||
  UGAUACAC UCUUUGGAU  GUC GAU    ACUUUG  A
UG        U         CA   A   -AUA      AG
Stem-loop sequence ACUAUGUGUAGAAACCUAAGUGGCCUAAACAUGAAAUCAUAGAGUUUCAAUAUAGACUGACUAGGUUUCUUCACAUAGUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI410095.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*||||||||||||||||||||
targets:66   UUCUCUUAGGUUUCUACACAUAGU   89

0.0 Sequence 8220 from Patent EP2074227 NA coding protein psRNATarget
JB170556.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*||||||||||||||||||||
targets:66   UUCUCUUAGGUUUCUACACAUAGU   89

0.0 Sequence 8220 from Patent EP2559767 NA coding protein psRNATarget
LQ242225.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*||||||||||||||||||||
targets:66   UUCUCUUAGGUUUCUACACAUAGU   89

0.0 Sequence 8220 from Patent EP2985353 NA coding protein psRNATarget
JB163429.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*||||||||||||||||||||
targets:69   UUCUCUUAGGUUUCUACACAUAGU   92

0.0 Sequence 1093 from Patent EP2559767 NA coding protein psRNATarget
LQ235326.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*||||||||||||||||||||
targets:69   UUCUCUUAGGUUUCUACACAUAGU   92

0.0 Sequence 1321 from Patent EP2985353 NA coding protein psRNATarget
JB163657.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*||||||||||||||||||||
targets:69   UUCUCUUAGGUUUCUACACAUAGU   92

0.0 Sequence 1321 from Patent EP2559767 NA coding protein psRNATarget
HI402968.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*||||||||||||||||||||
targets:69   UUCUCUUAGGUUUCUACACAUAGU   92

0.0 Sequence 1093 from Patent EP2074227 NA coding protein psRNATarget
LQ235098.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*||||||||||||||||||||
targets:69   UUCUCUUAGGUUUCUACACAUAGU   92

0.0 Sequence 1093 from Patent EP2985353 NA coding protein psRNATarget
HI403196.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*||||||||||||||||||||
targets:69   UUCUCUUAGGUUUCUACACAUAGU   92

0.0 Sequence 1321 from Patent EP2074227 NA coding protein psRNATarget
HI403222.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *==*||||||||||||||||||||
targets:137   UUUUCUUAGGUUUCUACACAUAGU   160

0.0 Sequence 1347 from Patent EP2074227 NA coding protein psRNATarget
JB163683.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *==*||||||||||||||||||||
targets:137   UUUUCUUAGGUUUCUACACAUAGU   160

0.0 Sequence 1347 from Patent EP2559767 NA coding protein psRNATarget
LQ235352.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *==*||||||||||||||||||||
targets:137   UUUUCUUAGGUUUCUACACAUAGU   160

0.0 Sequence 1347 from Patent EP2985353 NA coding protein psRNATarget
JB163668.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1332 from Patent EP2559767 NA coding protein psRNATarget
HI403210.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1335 from Patent EP2074227 NA coding protein psRNATarget
JB163706.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1370 from Patent EP2559767 NA coding protein psRNATarget
LQ235368.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1363 from Patent EP2985353 NA coding protein psRNATarget
HI403245.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1370 from Patent EP2074227 NA coding protein psRNATarget
LQ235366.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1361 from Patent EP2985353 NA coding protein psRNATarget
LQ235379.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1374 from Patent EP2985353 NA coding protein psRNATarget
JB163655.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1319 from Patent EP2559767 NA coding protein psRNATarget
JB163654.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1318 from Patent EP2559767 NA coding protein psRNATarget
LQ235384.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1379 from Patent EP2985353 NA coding protein psRNATarget
HI403207.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1332 from Patent EP2074227 NA coding protein psRNATarget
HI403238.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1363 from Patent EP2074227 NA coding protein psRNATarget
HI403194.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1319 from Patent EP2074227 NA coding protein psRNATarget
JB163697.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1361 from Patent EP2559767 NA coding protein psRNATarget
JB163710.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1374 from Patent EP2559767 NA coding protein psRNATarget
LQ235378.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1373 from Patent EP2985353 NA coding protein psRNATarget
JB163671.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1335 from Patent EP2559767 NA coding protein psRNATarget
JB163715.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1379 from Patent EP2559767 NA coding protein psRNATarget
LQ235337.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1332 from Patent EP2985353 NA coding protein psRNATarget
LQ235336.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *||-|||||||||*||||||||||
targets:67   UCC-CUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1331 from Patent EP2985353 NA coding protein psRNATarget
HI403193.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1318 from Patent EP2074227 NA coding protein psRNATarget
JB163709.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1373 from Patent EP2559767 NA coding protein psRNATarget
LQ235323.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1318 from Patent EP2985353 NA coding protein psRNATarget
JB163699.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1363 from Patent EP2559767 NA coding protein psRNATarget
JB163714.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1378 from Patent EP2559767 NA coding protein psRNATarget
HI403253.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1378 from Patent EP2074227 NA coding protein psRNATarget
JB163667.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *||-|||||||||*||||||||||
targets:67   UCC-CUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1331 from Patent EP2559767 NA coding protein psRNATarget
LQ235324.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1319 from Patent EP2985353 NA coding protein psRNATarget
HI403236.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1361 from Patent EP2074227 NA coding protein psRNATarget
HI403248.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1373 from Patent EP2074227 NA coding protein psRNATarget
LQ235375.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1370 from Patent EP2985353 NA coding protein psRNATarget
LQ235340.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1335 from Patent EP2985353 NA coding protein psRNATarget
HI403249.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1374 from Patent EP2074227 NA coding protein psRNATarget
HI403254.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1379 from Patent EP2074227 NA coding protein psRNATarget
HI403206.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *||-|||||||||*||||||||||
targets:67   UCC-CUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1331 from Patent EP2074227 NA coding protein psRNATarget
LQ235383.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:66   AUCUCUUAGGUUUGUACACAUAGU   89

1.5 Sequence 1378 from Patent EP2985353 NA coding protein psRNATarget
JB163695.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:69   AUCUCUUAGGUUUGUACACAUAGU   92

1.5 Sequence 1359 from Patent EP2559767 NA coding protein psRNATarget
LQ235364.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:69   AUCUCUUAGGUUUGUACACAUAGU   92

1.5 Sequence 1359 from Patent EP2985353 NA coding protein psRNATarget
HI403234.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*||||||||||
targets:69   AUCUCUUAGGUUUGUACACAUAGU   92

1.5 Sequence 1359 from Patent EP2074227 NA coding protein psRNATarget
HI403220.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*||||*|||||||||||||||
targets:137   UUCUCUUAAGUUUCUACACAUAGU   160

1.0 Sequence 1345 from Patent EP2074227 NA coding protein psRNATarget
JB163681.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*||||*|||||||||||||||
targets:137   UUCUCUUAAGUUUCUACACAUAGU   160

1.0 Sequence 1345 from Patent EP2559767 NA coding protein psRNATarget
LQ235350.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*||||*|||||||||||||||
targets:137   UUCUCUUAAGUUUCUACACAUAGU   160

1.0 Sequence 1345 from Patent EP2985353 NA coding protein psRNATarget
HI403209.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|*||||||||||||||||||
targets:143   UUCUCCUAGGUUUCUACACAUAGU   166

1.0 Sequence 1334 from Patent EP2074227 NA coding protein psRNATarget
JB163670.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|*||||||||||||||||||
targets:143   UUCUCCUAGGUUUCUACACAUAGU   166

1.0 Sequence 1334 from Patent EP2559767 NA coding protein psRNATarget
LQ235339.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|*||||||||||||||||||
targets:143   UUCUCCUAGGUUUCUACACAUAGU   166

1.0 Sequence 1334 from Patent EP2985353 NA coding protein psRNATarget
HI403169.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*|||||||||*
targets:64   AUCUCUUAGGUUUGUACACAUAGC   87

2.5 Sequence 1294 from Patent EP2074227 NA coding protein psRNATarget
JB163630.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*|||||||||*
targets:64   AUCUCUUAGGUUUGUACACAUAGC   87

2.5 Sequence 1294 from Patent EP2559767 NA coding protein psRNATarget
LQ235299.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*|||||||||*
targets:64   AUCUCUUAGGUUUGUACACAUAGC   87

2.5 Sequence 1294 from Patent EP2985353 NA coding protein psRNATarget
LQ235091.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*|||||||||*
targets:67   AUCUCUUAGGUUUGUACACAUAGC   90

2.5 Sequence 1086 from Patent EP2985353 NA coding protein psRNATarget
HI402961.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*|||||||||*
targets:67   AUCUCUUAGGUUUGUACACAUAGC   90

2.5 Sequence 1086 from Patent EP2074227 NA coding protein psRNATarget
JB163422.1
ncRNA:24   CGGUGAAUCCAAAGAUGUGUAUCA   1
  *=|*|||||||||*|||||||||*
targets:67   AUCUCUUAGGUUUGUACACAUAGC   90

2.5 Sequence 1086 from Patent EP2559767 NA coding protein psRNATarget
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