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BaseInfo

ncRNA ID	novel_zma_miR9130
Species	Zea mays
Class	miRNA
Genome position	Chr1:297417632-297417789 [-]
Reference genome	RefGen_v4
Source	SRR4237222;SRR4237223
Length	24
Mature sequence(if miRNA)	1 - AUUAGUCAAUAGAAACCAAACACC - 24
Stem-loop(if miRNA)	--             G     ---UUAUU        ---------         C C      AUCAAAU  A          C   UGUUUGGUUUCUA UGACU        GUUUAUUC         UAUUUUAGU U UAAAUU       AC GAAACUAAAA U   ||||||||||||| |||||        ||||||||         ||||||||| | ||||||       || |||||||||| C   ACAAACCAAAGAU ACUGA        CAGGUAAG         AUAAAAUCA A AUUUAA       UG CUUUGAUUUU U CC             A     UUAAAAAU        CAAAAUAAU         A A      -CGAUUU  C          A
Stem-loop sequence	UGUUUGGUUUCUAGUGACUUUAUUGUUUAUUCUAUUUUAGUCUCUAAAUUAUCAAAUACAGAAACUAAAACUCUAUUUUAGUUUCCGUUUUAGCAAUUUAAAAACUAAAAUAUAAUAAAACGAAUGGACUAAAAAUUAGUCAAUAGAAACCAAACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008676145.2	ncRNA:24   CCACAAACCAAAGAUAACUGAUUA   1   ||||||||||||||||*||||||| targets:829   GGUGUUUGGUUUCUAUGGACUAAU   852 Target Full Sequence	1.5	PREDICTED: Zea mays 23 kDa jasmonate-induced protein-like (LOC103650571), mRNA	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:24   CCACAAACCAAAGAUAACUGAUUA   1   |||||||||||||||*|||||||| targets:43   GGUGUUUGGUUUCUAGUGACUAAU   66 Target Full Sequence	1.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
JB163418.1	ncRNA:24   CCACAAACCAAAGAUAACUGAUUA   1   |||||||||||||||*|||||||| targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26 Target Full Sequence	1.5	Sequence 1082 from Patent EP2559767	NA	coding protein	psRNATarget
HI402957.1	ncRNA:24   CCACAAACCAAAGAUAACUGAUUA   1   |||||||||||||||*|||||||| targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26 Target Full Sequence	1.5	Sequence 1082 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235087.1	ncRNA:24   CCACAAACCAAAGAUAACUGAUUA   1   |||||||||||||||*|||||||| targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26 Target Full Sequence	1.5	Sequence 1082 from Patent EP2985353	NA	coding protein	psRNATarget
HI403095.1	ncRNA:24   CCACAAACCAAAGAUAACUGAUUA   1   |||||||||||||||*|||||||| targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26 Target Full Sequence	1.5	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
JB163556.1	ncRNA:24   CCACAAACCAAAGAUAACUGAUUA   1   |||||||||||||||*|||||||| targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26 Target Full Sequence	1.5	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:24   CCACAAACCAAAGAUAACUGAUUA   1   |||||||||||||||*|||||||| targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26 Target Full Sequence	1.5	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235125.1	ncRNA:24   CC-ACAAACCAAAGAUAACUGAUUA   1   ||-|||||||||||||*|||||||| targets:2   GGAUGUUUGGUUUCUAGUGACUAAU   26 Target Full Sequence	1.5	Sequence 1120 from Patent EP2985353	NA	coding protein	psRNATarget
HI402995.1	ncRNA:24   CC-ACAAACCAAAGAUAACUGAUUA   1   ||-|||||||||||||*|||||||| targets:2   GGAUGUUUGGUUUCUAGUGACUAAU   26 Target Full Sequence	1.5	Sequence 1120 from Patent EP2074227	NA	coding protein	psRNATarget
JB163456.1	ncRNA:24   CC-ACAAACCAAAGAUAACUGAUUA   1   ||-|||||||||||||*|||||||| targets:2   GGAUGUUUGGUUUCUAGUGACUAAU   26 Target Full Sequence	1.5	Sequence 1120 from Patent EP2559767	NA	coding protein	psRNATarget
EU946945.1	ncRNA:24   CCACAAACCAAAGAUAACUGAUUA   1   *||||||*|||||||*|||||||| targets:568   AGUGUUUAGUUUCUAGUGACUAAU   591 Target Full Sequence	2.5	Zea mays clone 325236 mRNA sequence	NA	coding protein	psRNATarget