Search result

BaseInfo

ncRNA ID	novel_zma_miR9128
Species	Zea mays
Class	miRNA
Genome position	Chr1:302539923-302540097 [-]
Reference genome	RefGen_v4
Source	SRR4237222
Length	21
Mature sequence(if miRNA)	155 - UUUGCUCAAACCGGAUGCCGA - 175
Stem-loop(if miRNA)	--                         A A             U     -----------GA    U   ACU     UG  G   --CAC    A   UUUGCUCAAACCGGAUGCCGAUGUG C UGCCACGUUGGAG CACUU             GUCC CGA   UGGCA  AU UGU     UUGG U   ||||||||||||||||||||||||| | ||||||||||||| |||||             |||| |||   |||||  || |||     ||||   AAACGAGUUUGGCCUACGGCUGCAC G AUGGUGUAACCUC GUGAG             CAGG GUU   ACUGU  UG ACG     AACU C CC                         C C             -     AUUAUUCAAGUCC    -   --C     GU  G   AUUCA    C
Stem-loop sequence	UUUGCUCAAACCGGAUGCCGAUGUGACAUGCCACGUUGGAGUCACUUGAGUCCUCGAACUUGGCAUGAUGUGUCACUUGGAUCCUCAAACUUAGCAGGUUGUGUCACUUGGGACCCUGAACUUAUUAGAGUGCUCCAAUGUGGUACGCCACGUCGGCAUCCGGUUUGAGCAAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235166.1	ncRNA:21   AGCCGUAGGCCAAACUCGUUU   1   ||||=|||||||||||||||| targets:158   UCGGUAUCCGGUUUGAGCAAA   178 Target Full Sequence	1.0	Sequence 1161 from Patent EP2985353	NA	coding protein	psRNATarget
JB163497.1	ncRNA:21   AGCCGUAGGCCAAACUCGUUU   1   ||||=|||||||||||||||| targets:158   UCGGUAUCCGGUUUGAGCAAA   178 Target Full Sequence	1.0	Sequence 1161 from Patent EP2559767	NA	coding protein	psRNATarget
HI403036.1	ncRNA:21   AGCCGUAGGCCAAACUCGUUU   1   ||||=|||||||||||||||| targets:158   UCGGUAUCCGGUUUGAGCAAA   178 Target Full Sequence	1.0	Sequence 1161 from Patent EP2074227	NA	coding protein	psRNATarget
JB163742.1	ncRNA:21   AGCCGUAGGCCAAACUCGUUU   1   |||*||||=|||||||||||| targets:199   UCGACAUCUGGUUUGAGCAAA   219 Target Full Sequence	2.5	Sequence 1406 from Patent EP2559767	NA	coding protein	psRNATarget
HI403281.1	ncRNA:21   AGCCGUAGGCCAAACUCGUUU   1   |||*||||=|||||||||||| targets:199   UCGACAUCUGGUUUGAGCAAA   219 Target Full Sequence	2.5	Sequence 1406 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235411.1	ncRNA:21   AGCCGUAGGCCAAACUCGUUU   1   |||*||||=|||||||||||| targets:199   UCGACAUCUGGUUUGAGCAAA   219 Target Full Sequence	2.5	Sequence 1406 from Patent EP2985353	NA	coding protein	psRNATarget