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BaseInfo

ncRNA ID	novel_zma_miR9127
Species	Zea mays
Class	miRNA
Genome position	Chr3:127458593-127458684 [-]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	69 - UGGAUUGAGAGGGAUUGAAGGGGA - 92
Stem-loop(if miRNA)	--U  A     A                C  U        AUACAA    GG UUGAG GGGAUUGAAGGGGAUU AA UCCCUUCC      A    || ||||| |||||||||||||||| || ||||||||      U    CC AAUUC CCCUAACUUCCCCUAA UU AGGGGAGG      U UCC  A     C                -  U        AUAAAU
Stem-loop sequence	UGGAUUGAGAGGGAUUGAAGGGGAUUCAAUUCCCUUCCAUACAAAUUUAAAUAGGAGGGGAUUUAAUCCCCUUCAAUCCCCCUUAAACCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548160.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   ||||||*||||=|||||||||||| targets:4910   UCCCCUCCAAUUCCUCUCAAUCCA   4933 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   ||||||*||||=|||||||||||| targets:5137   UCCCCUCCAAUUCCUCUCAAUCCA   5160 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT054737.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   ||||||||||||||||||||*||* targets:191   UCCCCUUCAAUCCCUCUCAAACCC   214 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *|||||||||||||*||||||||| targets:843   ACCCCUUCAAUCCCCCUCAAUCCA   866 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
EU962730.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *||||*|||||||||||||||||| targets:1067   ACCCCCUCAAUCCCUCUCAAUCCA   1090 Target Full Sequence	1.0	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
XM_008661229.2	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *||||*|||||=|||||||||||| targets:2734   ACCCCAUCAAUUCCUCUCAAUCCA   2757 Target Full Sequence	2.5	PREDICTED: Zea mays kanadaptin (LOC103638266), mRNA	NA	coding protein	psRNATarget
XM_008661613.2	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   |||*||*||||||||||||||||| targets:3041   UCCACUCCAAUCCCUCUCAAUCCA   3064 Target Full Sequence	1.0	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661611.2	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   |||*||*||||||||||||||||| targets:3046   UCCACUCCAAUCCCUCUCAAUCCA   3069 Target Full Sequence	1.0	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   ||||||*|||||||*||||||||| targets:3273   UCCCCUCCAAUCCCCCUCAAUCCA   3296 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   ||||||*|||||||*||||||||| targets:1594   UCCCCUCCAAUCCCCCUCAAUCCA   1617 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   ||||||*|||||||*||||||||| targets:1594   UCCCCUCCAAUCCCCCUCAAUCCA   1617 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT018211.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   ||*|||||=|||||||||||*||| targets:489   UCACCUUCGAUCCCUCUCAAACCA   512 Target Full Sequence	2.5	Zea mays clone EL01N0560G03.c mRNA sequence	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *||||*||||||||*||||||||| targets:1963   ACCCCCUCAAUCCCCCUCAAUCCA   1986 Target Full Sequence	2.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552750.1	ncRNA:24   AG---GGGAAG-UUAGGGAGAGUUAGGU   1   ||---|||*||-|||||||||||||||| targets:135   UCAAACCCAUCUAAUCCCUCUCAAUCCA   162 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103654238 (LOC103654238), mRNA	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *|=|*|||||||||*||||||||| targets:95   ACUCAUUCAAUCCCACUCAAUCCA   118 Target Full Sequence	1.5	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *|=|*|||||||||*||||||||| targets:95   ACUCAUUCAAUCCCACUCAAUCCA   118 Target Full Sequence	1.5	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *|=|*|||||||||*||||||||| targets:95   ACUCAUUCAAUCCCACUCAAUCCA   118 Target Full Sequence	1.5	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *|=|*|||||||||*||||||||| targets:88   ACUCAUUCAAUCCCACUCAAUCCA   111 Target Full Sequence	1.5	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *|=|*|||||||||*||||||||| targets:1121   ACUCAUUCAAUCCCACUCAAUCCA   1144 Target Full Sequence	1.5	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *|=|*|||||||||*||||||||| targets:1121   ACUCAUUCAAUCCCACUCAAUCCA   1144 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *|=|*|||||||||*||||||||| targets:1412   ACUCAUUCAAUCCCACUCAAUCCA   1435 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
EU968123.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *****||||||||||||||||||* targets:754   GGGGAUUCAAUCCCUCUCAAUCCU   777 Target Full Sequence	1.0	Zea mays clone 314796 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150924.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *****||||||||||||||||||* targets:754   GGGGAUUCAAUCCCUCUCAAUCCU   777 Target Full Sequence	1.0	Zea mays uncharacterized LOC100277329 (LOC100277329), mRNA	NA	coding protein	psRNATarget
XM_020546944.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *=***||||||||||||||||||* targets:656   GUGGAUUCAAUCCCUCUCAAUCCC   679 Target Full Sequence	1.0	PREDICTED: Zea mays cytochrome b5-like (LOC109943550), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546943.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *=***||||||||||||||||||* targets:713   GUGGAUUCAAUCCCUCUCAAUCCC   736 Target Full Sequence	1.0	PREDICTED: Zea mays cytochrome b5-like (LOC109943550), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018173.1	ncRNA:24   AGGGGAAGUUAGGGAGAGUUAGGU   1   *****||||||||||||||||||* targets:1389   GGGGAUUCAAUCCCUCUCAAUCCU   1412 Target Full Sequence	1.0	Zea mays clone EL01N0557C03.c mRNA sequence	NA	coding protein	psRNATarget