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BaseInfo

ncRNA ID	novel_zma_miR9123
Species	Zea mays
Class	miRNA
Genome position	Chr10:130889375-130889510 [-]
Reference genome	RefGen_v4
Source	SRR4237222;SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AUUGGGAAUAACCGAACAAAGCCU - 24
Stem-loop(if miRNA)	--              GC  U    -  U             A      UAU      AUCCCA      U   GUUUUGUUUGGUUA  CC CAAU CA GUGGAUUGAGUGA AUUGGA   AGUUGA      AAUAAG C   ||||||||||||||  || |||| || ||||||||||||| ||||||   ||||||      |||||| A   CGAAACAAGCCAAU  GG GUUA GU UACCUAACUUACU UAACUU   UUAAUU      UUAUUC A UC              AA  -    U  U             C      UUU      -----C      A
Stem-loop sequence	GUUUUGUUUGGUUAGCCCUCAAUCAUGUGGAUUGAGUGAAAUUGGAUAUAGUUGAAUCCCAAAUAAGUCAAACUUAUUCUUAAUUUUUUUCAAUCUCAUUCAAUCCAUUUGUAUUGGGAAUAACCGAACAAAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235150.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235135.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1130 from Patent EP2985353	NA	coding protein	psRNATarget
HI403005.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1130 from Patent EP2074227	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
JB163555.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
HI403019.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1144 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
JB163466.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1130 from Patent EP2559767	NA	coding protein	psRNATarget
JB163480.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1144 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235149.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1144 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
JB163551.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
HI403094.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAU   33 Target Full Sequence	0.0	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
EU942657.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:150   AGGCCUUGUUCGGUUAUUCCCAAU   173 Target Full Sequence	0.0	Zea mays clone 1527578 mRNA sequence	NA	coding protein	psRNATarget
EU949831.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:928   AGGCCUUGUUCGGUUAUUCCCAAU   951 Target Full Sequence	0.0	Zea mays clone 447574 mRNA sequence	NA	coding protein	psRNATarget
AY104167.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:1392   AGGCCUUGUUCGGUUAUUCCCAAU   1415 Target Full Sequence	0.0	Zea mays PCO062696 mRNA sequence	NA	coding protein	psRNATarget
NM_001148918.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:1378   AGGCCUUGUUCGGUUAUUCCCAAU   1401 Target Full Sequence	0.0	Zea mays nodulation homolog 1 (znod1), mRNA	NA	coding protein	psRNATarget
BT043378.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:1378   AGGCCUUGUUCGGUUAUUCCCAAU   1401 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:1442   AGGCCUUGUUCGGUUAUUCCCAAU   1465 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:1442   AGGCCUUGUUCGGUUAUUCCCAAU   1465 Target Full Sequence	0.0	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   |||*|||||||||||||||||||| targets:2124   AGGGUUUGUUCGGUUAUUCCCAAU   2147 Target Full Sequence	0.0	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:2412   AGGCCUUGUUCGGUUAUUCCCAAU   2435 Target Full Sequence	0.0	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666493.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:3395   AGGCCUUGUUCGGUUAUUCCCAAU   3418 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546709.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:3381   AGGCCUUGUUCGGUUAUUCCCAAU   3404 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008666491.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:3663   AGGCCUUGUUCGGUUAUUCCCAAU   3686 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666492.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:3668   AGGCCUUGUUCGGUUAUUCCCAAU   3691 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657579.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:7057   AGGCCUUGUUCGGUUAUUCCCAAU   7080 Target Full Sequence	0.0	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008657578.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:7161   AGGCCUUGUUCGGUUAUUCCCAAU   7184 Target Full Sequence	0.0	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542399.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||||||||||||||| targets:7172   AGGCCUUGUUCGGUUAUUCCCAAU   7195 Target Full Sequence	0.0	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ235173.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*|||||||||||||||||=| targets:10   AGGCCUUGUUCGGUUAUUCCCAGU   33 Target Full Sequence	1.5	Sequence 1168 from Patent EP2985353	NA	coding protein	psRNATarget
HI403043.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*|||||||||||||||||=| targets:10   AGGCCUUGUUCGGUUAUUCCCAGU   33 Target Full Sequence	1.5	Sequence 1168 from Patent EP2074227	NA	coding protein	psRNATarget
JB163504.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*|||||||||||||||||=| targets:10   AGGCCUUGUUCGGUUAUUCCCAGU   33 Target Full Sequence	1.5	Sequence 1168 from Patent EP2559767	NA	coding protein	psRNATarget
EU967549.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*|||||||||||||||=||| targets:580   AGGCCUUGUUCGGUUAUUCCUAAU   603 Target Full Sequence	1.5	Zea mays clone 304376 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154031.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*|||||=||||||||||||| targets:1727   AGGCCUUGUUUGGUUAUUCCCAAU   1750 Target Full Sequence	1.0	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
EU955633.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*|||||=||||||||||||| targets:1727   AGGCCUUGUUUGGUUAUUCCCAAU   1750 Target Full Sequence	1.0	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*|||||||||||||=||||| targets:3306   AGGCCUUGUUCGGUUAUUUCCAAU   3329 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*|||||||||||||=||||| targets:3319   AGGCCUUGUUCGGUUAUUUCCAAU   3342 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*|||||||||||||=||||| targets:3350   AGGCCUUGUUCGGUUAUUUCCAAU   3373 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001175969.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   |||=*|||||=||||||||||||| targets:1870   AGGUCUUGUUUGGUUAUUCCCAAU   1893 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA	NA	coding protein	psRNATarget
BT066874.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   |||=*|||||=||||||||||||| targets:1870   AGGUCUUGUUUGGUUAUUCCCAAU   1893 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658927.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||*|||||||||||||| targets:213   AGGCCUUGUCCGGUUAUUCCCAAU   236 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103636575 (LOC103636575), mRNA	NA	coding protein	psRNATarget
EU962956.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   |||**||||||||||||||||||| targets:1287   AGGACUUGUUCGGUUAUUCCCAAU   1310 Target Full Sequence	0.0	Zea mays clone 246872 mRNA sequence	NA	coding protein	psRNATarget
BT054550.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||*|||||||||||||||| targets:1692   AGGCCUUAUUCGGUUAUUCCCAAU   1715 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0152O03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152598.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||*|||||||||||||||| targets:1692   AGGCCUUAUUCGGUUAUUCCCAAU   1715 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279601 (LOC100279601), mRNA	NA	coding protein	psRNATarget
XM_020545430.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||||*||||||*|||||||||||| targets:5716   AGGCCUUGUUCAGUUAUUCCCAAU   5739 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA	NA	coding protein	psRNATarget
XM_008667120.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   |||**||||||||||||||=|||| targets:860   AGGAAUUGUUCGGUUAUUCUCAAU   883 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100501429 (LOC100501429), mRNA	NA	coding protein	psRNATarget
BT040331.1	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   |*||*|||||||||||||||=||| targets:1710   AUGCCUUGUUCGGUUAUUCCUAAU   1733 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0083E04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157801.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   |*||*|||||||||||||||=||| targets:1747   AUGCCUUGUUCGGUUAUUCCUAAU   1770 Target Full Sequence	1.5	Zea mays Flavonoid 3-monooxygenase (LOC100273153), mRNA	NA	coding protein	psRNATarget
BT069961.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   |||=*|||||=||||||||||*|| targets:22   AGGUCUUGUUUGGUUAUUCCCUAU   45 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0347H16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008677073.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   |||=*||||||||||||*|||||* targets:1807   AGGUCUUGUUCGGUUAUACCCAAA   1830 Target Full Sequence	2.5	PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:22   CGAAACAAGCCAAUAAGGGUUA   1   ||*||*|||||||||||||||| targets:1   GCCUUAUUCGGUUAUUCCCAAU   22 Target Full Sequence	1.0	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget
HI405877.1	ncRNA:22   CGAAACAAGCCAAUAAGGGUUA   1   ||*||*|||||||||||||||| targets:1   GCCUUAUUCGGUUAUUCCCAAU   22 Target Full Sequence	1.0	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
JB166338.1	ncRNA:22   CGAAACAAGCCAAUAAGGGUUA   1   ||*||*|||||||||||||||| targets:1   GCCUUAUUCGGUUAUUCCCAAU   22 Target Full Sequence	1.0	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008670991.2	ncRNA:24   UCCGAAACAAGCCAAUAAGGGUUA   1   ||*|*|||||||||||||||||** targets:1963   AGACAUUGUUCGGUUAUUCCCAUC   1986 Target Full Sequence	2.5	PREDICTED: Zea mays probable folate-biopterin transporter 2 (LOC103646263), transcript variant X1, mRNA	NA	coding protein	psRNATarget