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BaseInfo

ncRNA ID	novel_zma_miR9121
Species	Zea mays
Class	miRNA
Genome position	Chr1:272553366-272553460 [+]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	1 - GACUAACUGUGCCACACUUUGCCU - 24
Stem-loop(if miRNA)	--GA      G                -------------        C    G     CUAACU UGCCACACUUUGCCUA             AGGUUAGU GUUC A     |||||| ||||||||||||||||             |||||||| |||| A     GAUUGA ACGGUGUGAAACGGAU             UCCAAUCA CAAG U GACG      -                UGAGAAGACGGAU        A    U
Stem-loop sequence	GACUAACUGUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAACAACUAACCUUAGGCAGAAGAGUUAGGCAAAGUGUGGCAAGUUAGGCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163853.1	ncRNA:24   UCCGUUUCACACCGUGUCAAUCAG   1   ||||||||||||||||||||||*| targets:89   AGGCAAAGUGUGGCACAGUUAGCC   112 Target Full Sequence	1.5	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   UCCGUUUCACACCGUGUCAAUCAG   1   ||||||||||||||||||||||*| targets:89   AGGCAAAGUGUGGCACAGUUAGCC   112 Target Full Sequence	1.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   UCCGUUUCACACCGUGUCAAUCAG   1   ||||||||||||||||||||||*| targets:89   AGGCAAAGUGUGGCACAGUUAGCC   112 Target Full Sequence	1.5	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
HI403368.1	ncRNA:24   UCCGUUUCACACCGUGUCAAUCAG   1   ||||||||||||||||||||||*| targets:89   AGGCAAAGUGUGGCACAGUUAGCC   112 Target Full Sequence	1.5	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   UCCGUUUCACACCGUGUCAAUCAG   1   ||||||||||||||||||||||*| targets:89   AGGCAAAGUGUGGCACAGUUAGCC   112 Target Full Sequence	1.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
JB163829.1	ncRNA:24   UCCGUUUCACACCGUGUCAAUCAG   1   ||||||||||||||||||||||*| targets:89   AGGCAAAGUGUGGCACAGUUAGCC   112 Target Full Sequence	1.5	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
HI403286.1	ncRNA:24   UCCGUUUCACACCGUGUCAAUCAG   1   ||||||||||||||||||||||*| targets:89   AGGCAAAGUGUGGCACAGUUAGCC   112 Target Full Sequence	1.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   UCCGUUUCACACCGUGUCAAUCAG   1   ||||||||||||||||||||||*| targets:89   AGGCAAAGUGUGGCACAGUUAGCC   112 Target Full Sequence	1.5	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   UCCGUUUCACACCGUGUCAAUCAG   1   ||||||||||||||||||||||*| targets:89   AGGCAAAGUGUGGCACAGUUAGCC   112 Target Full Sequence	1.5	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235414.1	ncRNA:24   UCCGUUUCACACCGUGUCAAUCAG   1   |||=||||||||||||||||||*| targets:86   AGGUAAAGUGUGGCACAGUUAGCC   109 Target Full Sequence	1.5	Sequence 1409 from Patent EP2985353	NA	coding protein	psRNATarget
JB163745.1	ncRNA:24   UCCGUUUCACACCGUGUCAAUCAG   1   |||=||||||||||||||||||*| targets:86   AGGUAAAGUGUGGCACAGUUAGCC   109 Target Full Sequence	1.5	Sequence 1409 from Patent EP2559767	NA	coding protein	psRNATarget
HI403284.1	ncRNA:24   UCCGUUUCACACCGUGUCAAUCAG   1   |||=||||||||||||||||||*| targets:86   AGGUAAAGUGUGGCACAGUUAGCC   109 Target Full Sequence	1.5	Sequence 1409 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008663861.2	ncRNA:24   UCCGUUUCACACCGUGUCAAUCAG   1   ||*|||||||||||||||||||*| targets:2476   AGCCAAAGUGUGGCACAGUUAGCC   2499 Target Full Sequence	1.5	PREDICTED: Zea mays Sister chromatid cohesion 1 protein 3 (LOC100304299), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403292.1	ncRNA:24   UCC--GUUUCACACCGUGUCAAUCAG   1   |||--||||*||||||||||||||*| targets:89   AGGAGCAAACUGUGGCACAGUUAGCC   114 Target Full Sequence	2.5	Sequence 1417 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235422.1	ncRNA:24   UCC--GUUUCACACCGUGUCAAUCAG   1   |||--||||*||||||||||||||*| targets:89   AGGAGCAAACUGUGGCACAGUUAGCC   114 Target Full Sequence	2.5	Sequence 1417 from Patent EP2985353	NA	coding protein	psRNATarget
JB163753.1	ncRNA:24   UCC--GUUUCACACCGUGUCAAUCAG   1   |||--||||*||||||||||||||*| targets:89   AGGAGCAAACUGUGGCACAGUUAGCC   114 Target Full Sequence	2.5	Sequence 1417 from Patent EP2559767	NA	coding protein	psRNATarget