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BaseInfo

ncRNA ID novel_zma_miR9119
Species Zea mays
Class miRNA
Genome position Chr10:133218637-133218706 [-]
Reference genome RefGen_v4
Source SRR4237222;SRR4237225
Length 21
Mature sequence(if miRNA) 1 - AUUUAAUCCCCUCUAAUCCCC - 21
Stem-loop(if miRNA) --                      CUC       A
  GGAUUGGAGGGGAUUAAAUCUC   CUAUAUA A
  ||||||||||||||||||||||   |||||||
  CCUAAUCUCCCCUAAUUUAGAG   GAUAUGU U
CC                      UAA       U
Stem-loop sequence GGAUUGGAGGGGAUUAAAUCUCCUCCUAUAUAAAUUUGUAUAGAAUGAGAUUUAAUCCCCUCUAAUCCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT085111.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |||||||=|||||||||||||
targets:1284   GGGGAUUGGAGGGGAUUAAAU   1304

1.0 Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds NA coding protein psRNATarget
XM_020552749.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |||||||=|||||||||||||
targets:3216   GGGGAUUGGAGGGGAUUAAAU   3236

1.0 PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA NA coding protein psRNATarget
EZ093244.1
ncRNA:21   CC-CCUAAUCUCCCCUAAUUUA   1
  ||-|||||=|||||||||||||
targets:19   GGAGGAUUGGAGGGGAUUAAAU   40

3.0 TSA: Zea mays contig28894, mRNA sequence NA coding protein psRNATarget
BT054737.1
ncRNA:21   CC-CCUAAUCUCCCCUAAUUUA   1
  ||-|||||=|||||||||||||
targets:133   GGAGGAUUGGAGGGGAUUAAAU   154

3.0 Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds NA coding protein psRNATarget
HI402991.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  ||*||||=|||||||||||||
targets:26   GGAGAUUGGAGGGGAUUAAAU   46

2.0 Sequence 1116 from Patent EP2074227 NA coding protein psRNATarget
JB163452.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  ||*||||=|||||||||||||
targets:26   GGAGAUUGGAGGGGAUUAAAU   46

2.0 Sequence 1116 from Patent EP2559767 NA coding protein psRNATarget
LQ235121.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  ||*||||=|||||||||||||
targets:26   GGAGAUUGGAGGGGAUUAAAU   46

2.0 Sequence 1116 from Patent EP2985353 NA coding protein psRNATarget
EZ095217.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |||||||=||||||*||||||
targets:64   GGGGAUUGGAGGGGUUUAAAU   84

2.5 TSA: Zea mays contig30870, mRNA sequence NA coding protein psRNATarget
EZ059519.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |||||||=*||||||||||||
targets:439   GGGGAUUGAAGGGGAUUAAAU   459

2.5 TSA: Zea mays contig60641, mRNA sequence NA coding protein psRNATarget
BT041883.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |*|||||=|||||||||||||
targets:813   GCGGAUUGGAGGGGAUUAAAU   833

1.0 Zea mays full-length cDNA clone ZM_BFb0073E14 mRNA, complete cds NA coding protein psRNATarget
XM_020542872.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |||||||=||||||*||||||
targets:1295   GGGGAUUGGAGGGGUUUAAAU   1315

2.5 PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (LOC103634808), transcript variant X1, mRNA NA coding protein psRNATarget
BT042029.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |||||||=|||*|||||||||
targets:200   GGGGAUUGGAGAGGAUUAAAU   220

2.5 Zea mays full-length cDNA clone ZM_BFb0114D19 mRNA, complete cds NA coding protein psRNATarget
BT062257.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |*|||||=|||||||||||||
targets:1112   GCGGAUUGGAGGGGAUUAAAU   1132

1.0 Zea mays full-length cDNA clone ZM_BFb0234J14 mRNA, complete cds NA coding protein psRNATarget
BT069231.2
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |||||||=||||*||||||||
targets:1000   GGGGAUUGGAGGAGAUUAAAU   1020

2.5 Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds NA coding protein psRNATarget
XM_020540164.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |||||||=||||||*||||||
targets:1547   GGGGAUUGGAGGGGUUUAAAU   1567

2.5 PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA NA coding protein psRNATarget
EU975659.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |*|||||=|||||||||||||
targets:2141   GCGGAUUGGAGGGGAUUAAAU   2161

1.0 Zea mays clone 495563 ankyrin protein kinase-like mRNA, complete cds NA coding protein psRNATarget
NM_001158998.2
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |*|||||=|||||||||||||
targets:2142   GCGGAUUGGAGGGGAUUAAAU   2162

1.0 Zea mays Ankyrin protein kinase-like (LOC100279910), mRNA NA coding protein psRNATarget
XM_008680079.2
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |||||||=|||*|||||||||
targets:2790   GGGGAUUGGAGAGGAUUAAAU   2810

2.5 PREDICTED: Zea mays transcription factor GTE9 (LOC103653114), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008680080.2
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |||||||=|||*|||||||||
targets:2790   GGGGAUUGGAGAGGAUUAAAU   2810

2.5 PREDICTED: Zea mays transcription factor GTE9 (LOC103653114), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008680078.2
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |||||||=|||*|||||||||
targets:3129   GGGGAUUGGAGAGGAUUAAAU   3149

2.5 PREDICTED: Zea mays transcription factor GTE9 (LOC103653114), transcript variant X1, mRNA NA coding protein psRNATarget
BT087485.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |*|||||||||||||||=||*
targets:35   GUGGAUUAGAGGGGAUUGAAG   55

2.5 Zea mays full-length cDNA clone ZM_BFb0092B21 mRNA, complete cds NA coding protein psRNATarget
XM_020547641.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  *||||||=|||*|||||||||
targets:3101   UGGGAUUGGAGUGGAUUAAAU   3121

2.5 PREDICTED: Zea mays U11/U12 small nuclear ribonucleoprotein 48 kDa protein (LOC100279189), transcript variant X2, mRNA NA coding protein psRNATarget
AY109459.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |||*||||||||*||||||||
targets:1482   GGGAAUUAGAGGAGAUUAAAU   1502

2.5 Zea mays CL2557_1 mRNA sequence NA coding protein psRNATarget
NM_001138999.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:640   GAAGGUUGGAGGGGAUUAAAU   660

3.0 Zea mays uncharacterized LOC100193927 (LOC100193927), mRNA NA coding protein psRNATarget
BT036315.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:640   GAAGGUUGGAGGGGAUUAAAU   660

3.0 Zea mays full-length cDNA clone ZM_BFb0106N02 mRNA, complete cds NA coding protein psRNATarget
EU948310.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:680   GAAGGUUGGAGGGGAUUAAAU   700

3.0 Zea mays clone 372688 mRNA sequence NA coding protein psRNATarget
BT061759.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:1545   GAAGGUUGGAGGGGAUUAAAU   1565

3.0 Zea mays full-length cDNA clone ZM_BFb0180I03 mRNA, complete cds NA coding protein psRNATarget
XM_020553085.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:2660   GAAGGUUGGAGGGGAUUAAAU   2680

3.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020553084.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:2725   GAAGGUUGGAGGGGAUUAAAU   2745

3.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020553083.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:2739   GAAGGUUGGAGGGGAUUAAAU   2759

3.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020553082.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:2747   GAAGGUUGGAGGGGAUUAAAU   2767

3.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X9, mRNA NA coding protein psRNATarget
XM_008682997.2
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:2750   GAAGGUUGGAGGGGAUUAAAU   2770

3.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008682996.2
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:2754   GAAGGUUGGAGGGGAUUAAAU   2774

3.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008682995.2
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:2769   GAAGGUUGGAGGGGAUUAAAU   2789

3.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008682994.2
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:2815   GAAGGUUGGAGGGGAUUAAAU   2835

3.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008682993.2
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:2819   GAAGGUUGGAGGGGAUUAAAU   2839

3.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008682992.2
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:2829   GAAGGUUGGAGGGGAUUAAAU   2849

3.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008682991.2
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:2837   GAAGGUUGGAGGGGAUUAAAU   2857

3.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008682990.2
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**|=||=|||||||||||||
targets:2841   GAAGGUUGGAGGGGAUUAAAU   2861

3.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551501.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  **|||||=|||*|||||||||
targets:1238   AUGGAUUGGAGUGGAUUAAAU   1258

2.5 PREDICTED: Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (cl12347_2a), transcript variant X2, mRNA NA coding protein psRNATarget
BT018211.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  *|||||*|||||*||||||||
targets:469   UGGGAUCAGAGGAGAUUAAAU   489

2.5 Zea mays clone EL01N0560G03.c mRNA sequence NA coding protein psRNATarget
BT085393.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  *|*||||||||*|||||||||
targets:1624   AGAGAUUAGAGAGGAUUAAAU   1644

2.5 Zea mays full-length cDNA clone ZM_BFc0006K23 mRNA, complete cds NA coding protein psRNATarget
EZ056710.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  ***|||||*||||||||||||
targets:167   AAAGAUUAUAGGGGAUUAAAU   187

2.5 TSA: Zea mays contig57832, mRNA sequence NA coding protein psRNATarget
XM_020547504.1
ncRNA:21   CCCCUAAUCUCCCCUAAUUUA   1
  |**||||||||*|||||||||
targets:2666   GAUGAUUAGAGAGGAUUAAAU   2686

2.5 PREDICTED: Zea mays uncharacterized LOC100272671 (LOC100272671), transcript variant X1, mRNA NA coding protein psRNATarget
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