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BaseInfo

ncRNA ID	novel_zma_miR9117
Species	Zea mays
Class	miRNA
Genome position	Chr1:252216120-252216263 [+]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	121 - CAUCGGACUGUCCGGUGCACCCGA - 144
Stem-loop(if miRNA)	--  AG         U        UG        --          G  AGAUCU   A  GUCGGCAACGGUCG   GG  GCACCGGAC GUCCGGUG  CACCGGAC  UGUCCGGUGC CC      GCA CG              G   ||  ||||||||| ||||||||  ||||||||  |||||||||| ||      ||| ||   CC  CGUGGCCUG CAGGCUAC  GUGGCCUG  ACAGGCCACG GG      AUA AA              C AG  CA         U        GU        UG          -  --CUAA   -  GGAAUUUGUCGCGU
Stem-loop sequence	GGAGGCACCGGACUGUCCGGUGUGCACCGGACUGUCCGGUGCGCCAGAUCUGCAACGGUCGGCAACGGUCGGCUGCGCUGUUUAAGGAAAUAAAUCGGGCACCGGACAGUGUCCGGUGUGCAUCGGACUGUCCGGUGCACCCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT065201.2	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   |||||||||||||||||||||=|| targets:585   UCGGGUGCACCGGACAGUCCGGUG   608 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   |||||||||||||||||||||=|| targets:137   UCGGGUGCACCGGACAGUCCGGUG   160 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   *=|||||||||||||||||||=|| targets:588   AUGGGUGCACCGGACAGUCCGGUG   611 Target Full Sequence	1.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   AGC--CCACGUGGCCUGUCAGGCUAC   1   *||--||||||||||||||||||=|| targets:820   CCGCUGGUGCACCGGACAGUCCGGUG   845 Target Full Sequence	1.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   *=|||||||||||||||||||=|| targets:588   AUGGGUGCACCGGACAGUCCGGUG   611 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   AGC--CCACGUGGCCUGUCAGGCUAC   1   *||--||||||||||||||||||=|| targets:820   CCGCUGGUGCACCGGACAGUCCGGUG   845 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   AGC---CCACGUGGCCUGUCAGGCUAC   1   |||---||||||||||||||||||=|| targets:145   UCGAGUGGUGCACCGGACAGUCCGGUG   171 Target Full Sequence	1.5	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   AGC---CCACGUGGCCUGUCAGGCUAC   1   |||---||||||||||||||||||=|| targets:145   UCGAGUGGUGCACCGGACAGUCCGGUG   171 Target Full Sequence	1.5	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   AGC---CCACGUGGCCUGUCAGGCUAC   1   |||---||||||||||||||||||=|| targets:145   UCGAGUGGUGCACCGGACAGUCCGGUG   171 Target Full Sequence	1.5	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   |||||*|||||||||||||||=|| targets:496   UCGGGCGCACCGGACAGUCCGGUG   519 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   |||||*|||||||||||||||=|| targets:496   UCGGGCGCACCGGACAGUCCGGUG   519 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   |||||*|||||||||||||||=|| targets:484   UCGGGCGCACCGGACAGUCCGGUG   507 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   |||||*|||||||||||||||=|| targets:484   UCGGGCGCACCGGACAGUCCGGUG   507 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   |||||*|||||||||||||||=|| targets:4378   UCGGGCGCACCGGACAGUCCGGUG   4401 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
EU950973.1	ncRNA:24   AGCC-CACGUGGCCUGUCAGGCUAC   1   *|||-|||||||||||||||||=|| targets:181   CCGGUGUGCACCGGACAGUCCGGUG   205 Target Full Sequence	1.5	Zea mays clone 677173 mRNA sequence	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   *|*||||||||||||||||||=|| targets:829   CCUGGUGCACCGGACAGUCCGGUG   852 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   *|*||||||||||||||||||=|| targets:92   CCUGGUGCACCGGACAGUCCGGUG   115 Target Full Sequence	1.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   *|*||||||||||||||||||=|| targets:92   CCUGGUGCACCGGACAGUCCGGUG   115 Target Full Sequence	1.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   *|*||||||||||||||||||=|| targets:92   CCUGGUGCACCGGACAGUCCGGUG   115 Target Full Sequence	1.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   *|*||||||||||||||||||=|| targets:762   CCUGGUGCACCGGACAGUCCGGUG   785 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238722.1	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   ***||||||||||||||||=|||| targets:4   GGAGGUGCACCGGACAGUCUGAUG   27 Target Full Sequence	1.5	Sequence 4717 from Patent EP2985353	NA	coding protein	psRNATarget
HI406592.1	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   ***||||||||||||||||=|||| targets:4   GGAGGUGCACCGGACAGUCUGAUG   27 Target Full Sequence	1.5	Sequence 4717 from Patent EP2074227	NA	coding protein	psRNATarget
JB167053.1	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   ***||||||||||||||||=|||| targets:4   GGAGGUGCACCGGACAGUCUGAUG   27 Target Full Sequence	1.5	Sequence 4717 from Patent EP2559767	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   *||||*|||||||||||||||=|| targets:331   ACGGGCGCACCGGACAGUCCGGUG   354 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   *||||*|||||||||||||||=|| targets:331   ACGGGCGCACCGGACAGUCCGGUG   354 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   AGC---CCACGUGGCCUGUCAGGCUAC   1   |||---||*|||||||||||||||=|| targets:501   UCGCCUGGCGCACCGGACAGUCCGGUG   527 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   AGC--CCACGUGGCCUGUCAGGCUAC   1   *||--||*|||||||||||||||=|| targets:598   ACGUUGGCGCACCGGACAGUCCGGUG   623 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   AGC---CCACGUGGCCUGUCAGGCUAC   1   |||---||*|||||||||||||||=|| targets:501   UCGCCUGGCGCACCGGACAGUCCGGUG   527 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   AGC--CCACGUGGCCUGUCAGGCUAC   1   *||--||*|||||||||||||||=|| targets:598   ACGUUGGCGCACCGGACAGUCCGGUG   623 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
EZ108756.1	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   *=|||*|||||||||||||||=|| targets:145   AUGGGCGCACCGGACAGUCCGGUG   168 Target Full Sequence	2.5	TSA: Zea mays contig44415, mRNA sequence	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   ||*||*|||||||||||||||=|| targets:375   UCUGGCGCACCGGACAGUCCGGUG   398 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
EZ066204.1	ncRNA:24   AGC---CCACGUGGCCUGUCAGGCUAC   1   |||---||*|||||||||||||||=|| targets:87   UCGCAUGGCGCACCGGACAGUCCGGUG   113 Target Full Sequence	2.5	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget
LQ242120.1	ncRNA:24   AGCC--CACGUGGCCUGUCAGGCUAC   1   *|||--||||||||||||||||*||| targets:30   CCGGUGGUGCACCGGACAGUCCAAUG   55 Target Full Sequence	1.5	Sequence 8115 from Patent EP2985353	NA	coding protein	psRNATarget
JB170451.1	ncRNA:24   AGCC--CACGUGGCCUGUCAGGCUAC   1   *|||--||||||||||||||||*||| targets:30   CCGGUGGUGCACCGGACAGUCCAAUG   55 Target Full Sequence	1.5	Sequence 8115 from Patent EP2559767	NA	coding protein	psRNATarget
HI409990.1	ncRNA:24   AGCC--CACGUGGCCUGUCAGGCUAC   1   *|||--||||||||||||||||*||| targets:30   CCGGUGGUGCACCGGACAGUCCAAUG   55 Target Full Sequence	1.5	Sequence 8115 from Patent EP2074227	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   AGC---CCACGUGGCCUGUCAGGCUAC   1   |||---||*|||||||||||||||=|| targets:471   UCGCAUGGCGCACCGGACAGUCCGGUG   497 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   *|*||*|||||||||||||||=|| targets:779   CCUGGCGCACCGGACAGUCCGGUG   802 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   AGCCCACGUGGCCUGUCAGGCUAC   1   *|*||*|||||||||||||||=|| targets:779   CCUGGCGCACCGGACAGUCCGGUG   802 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   AGC---CCACGUGGCCUGUCAGGCUAC   1   |||---||*|||||||||||||||=|| targets:2536   UCGACUGGCGCACCGGACAGUCCGGUG   2562 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EZ109126.1	ncRNA:24   AGC--CCACGUGGCCUGUCAGGCUAC   1   |=|--||*|||||||||||||||=|| targets:172   UUGAUGGCGCACCGGACAGUCCGGUG   197 Target Full Sequence	2.5	TSA: Zea mays contig44785, mRNA sequence	NA	coding protein	psRNATarget
EZ065990.1	ncRNA:22   CCCACGUGGCCUGUCAGGCUAC   1   *||*|||||||||||||||=|| targets:1   UGGCGCACCGGACAGUCCGGUG   22 Target Full Sequence	2.5	TSA: Zea mays contig01624, mRNA sequence	NA	coding protein	psRNATarget