Search result

BaseInfo

ncRNA ID novel_zma_miR9115
Species Zea mays
Class miRNA
Genome position Chr3:128762130-128762191 [-]
Reference genome RefGen_v4
Source SRR1997865
Length 24
Mature sequence(if miRNA) 39 - AGGAUUAGAGGGGAUUGAGGGGGA - 62
Stem-loop(if miRNA) --      A                    UA
  AGGAUU GAGGGGAUUGAGGGGGAAAU  G
  |||||| ||||||||||||||||||||
  UCCUAA CUCCCCUAACUCCCCCUUUA  U
CC      C                    UU
Stem-loop sequence AGGAUUAGAGGGGAUUGAGGGGGAAAUUAGUUUAUUUCCCCCUCAAUCCCCUCCAAUCCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008649581.2
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |||||||||||||||||||||||*
targets:1798   UCCCCCUCAAUCCCCUCUAAUCCC   1821

1.0 PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA NA coding protein psRNATarget
JB163954.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |||||||||||||||||*||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
HI403493.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |||||||||||||||||*||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
LQ235623.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |||||||||||||||||*||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
LQ235532.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |||=||||||||=||||||||||*
targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90

2.5 Sequence 1527 from Patent EP2985353 NA coding protein psRNATarget
LQ235365.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |||=||||||||=||||||||||*
targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90

2.5 Sequence 1360 from Patent EP2985353 NA coding protein psRNATarget
HI403402.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |||=||||||||=||||||||||*
targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90

2.5 Sequence 1527 from Patent EP2074227 NA coding protein psRNATarget
JB163863.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |||=||||||||=||||||||||*
targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90

2.5 Sequence 1527 from Patent EP2559767 NA coding protein psRNATarget
JB163696.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |||=||||||||=||||||||||*
targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90

2.5 Sequence 1360 from Patent EP2559767 NA coding protein psRNATarget
HI403235.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |||=||||||||=||||||||||*
targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90

2.5 Sequence 1360 from Patent EP2074227 NA coding protein psRNATarget
LQ235485.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |=|=|||||||||||||*||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2985353 NA coding protein psRNATarget
HI403355.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |=|=|||||||||||||*||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2074227 NA coding protein psRNATarget
JB163816.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |=|=|||||||||||||*||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2559767 NA coding protein psRNATarget
XM_020549567.1
ncRNA:24   AG---GGGGAGUUAGGGGAGAUUAGGA   1
  ||---|||||||||||||||||||||*
targets:1064   UCUAGCCCCUCAAUCCCCUCUAAUCCC   1090

1.0 PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA NA coding protein psRNATarget
BT088155.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  ||=|=||||||||||||*||||||
targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486

1.5 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
EZ098881.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |==||||=|||||||||*||||||
targets:77   UUUCCCUUAAUCCCCUCCAAUCCU   100

2.5 TSA: Zea mays contig34536, mRNA sequence NA coding protein psRNATarget
EZ055746.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |=|*|||||||||||||*||||||
targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98

1.5 TSA: Zea mays contig56868, mRNA sequence NA coding protein psRNATarget
AY110351.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  |=|*|||||||||||||*||||||
targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64

1.5 Zea mays CL33021_1 mRNA sequence NA coding protein psRNATarget
EU952092.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  *|*||||||||||||||||||=|*
targets:468   GCACCCUCAAUCCCCUCUAAUUCC   491

2.5 Zea mays clone 1163776 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020545634.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  *|*||||||||||||||||||=|*
targets:7606   GCACCCUCAAUCCCCUCUAAUUCC   7629

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020545628.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  *|*||||||||||||||||||=|*
targets:7756   GCACCCUCAAUCCCCUCUAAUUCC   7779

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020545630.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  *|*||||||||||||||||||=|*
targets:7911   GCACCCUCAAUCCCCUCUAAUUCC   7934

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020545629.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  *|*||||||||||||||||||=|*
targets:7911   GCACCCUCAAUCCCCUCUAAUUCC   7934

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020545631.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  *|*||||||||||||||||||=|*
targets:7876   GCACCCUCAAUCCCCUCUAAUUCC   7899

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020545626.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  *|*||||||||||||||||||=|*
targets:7911   GCACCCUCAAUCCCCUCUAAUUCC   7934

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545633.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  *|*||||||||||||||||||=|*
targets:7903   GCACCCUCAAUCCCCUCUAAUUCC   7926

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X9, mRNA NA coding protein psRNATarget
LQ235420.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  ||=|*||||||||||||*|||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2985353 NA coding protein psRNATarget
HI403290.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  ||=|*||||||||||||*|||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2074227 NA coding protein psRNATarget
JB163751.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  ||=|*||||||||||||*|||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2559767 NA coding protein psRNATarget
NM_001154659.2
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  *|=|*||=|||||||||||||||*
targets:2124   ACUCACUUAAUCCCCUCUAAUCCA   2147

2.0 Zea mays transport inhibitor response 1 protein (LOC100281739), mRNA NA coding protein psRNATarget
EU957719.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  *|=|*||=|||||||||||||||*
targets:2125   ACUCACUUAAUCCCCUCUAAUCCA   2148

2.0 Zea mays clone 1612818 transport inhibitor response 1 protein mRNA, complete cds NA coding protein psRNATarget
EZ089372.1
ncRNA:24   AGGGGGAGUUAGGGGAGAUUAGGA   1
  **||*||||||=|||||||||||*
targets:66   AGCCACUCAAUUCCCUCUAAUCCC   89

2.5 TSA: Zea mays contig25018, mRNA sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.