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BaseInfo

ncRNA ID	novel_zma_miR9114
Species	Zea mays
Class	miRNA
Genome position	Chr1:251760376-251760453 [+]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	1 - AGGGGAUUGGAGGGGCUAAAUUCC - 24
Stem-loop(if miRNA)	--                        A           A   AGGGGAUUGGAGGGGCUAAAUUCC CUUCUUAUUCA A   |||||||||||||||||||||||| |||||||||||   UCUCCUAACCUCCCCGAUUUAAGG GAAGAAUAAGU A CU                        G           U
Stem-loop sequence	AGGGGAUUGGAGGGGCUAAAUUCCACUUCUUAUUCAAAAUUGAAUAAGAAGGGGAAUUUAGCCCCUCCAAUCCUCUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539411.1	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*|||||||||||||||||||| targets:3494   GGAUUUUAGCCCCUCCAAUCCCCU   3517 Target Full Sequence	0.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*|||||||||||||||||||| targets:3529   GGAUUUUAGCCCCUCCAAUCCCCU   3552 Target Full Sequence	0.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB163850.1	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*|||||||||||||||=|||| targets:68   GGAUUUUAGCCCCUCCAAUUCCCU   91 Target Full Sequence	1.5	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235519.1	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*|||||||||||||||=|||| targets:68   GGAUUUUAGCCCCUCCAAUUCCCU   91 Target Full Sequence	1.5	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
HI403389.1	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*|||||||||||||||=|||| targets:68   GGAUUUUAGCCCCUCCAAUUCCCU   91 Target Full Sequence	1.5	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
JB166281.1	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*|||||||||||=|||||||| targets:196   GGAUUUUAGCCCCUCUAAUCCCCU   219 Target Full Sequence	1.5	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
HI405820.1	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*|||||||||||=|||||||| targets:196   GGAUUUUAGCCCCUCUAAUCCCCU   219 Target Full Sequence	1.5	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*|||||||||||=|||||||| targets:196   GGAUUUUAGCCCCUCUAAUCCCCU   219 Target Full Sequence	1.5	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
EU974541.1	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*||||||||||=||||||||| targets:1473   GGAUUUUAGCCCCUUCAAUCCCCU   1496 Target Full Sequence	1.5	Zea mays clone 452157 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137538.2	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*||||||||||=||||||||| targets:1572   GGAUUUUAGCCCCUUCAAUCCCCU   1595 Target Full Sequence	1.5	Zea mays Ycf20-like protein (LOC100192115), mRNA	NA	coding protein	psRNATarget
XM_008682827.2	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*||||||||||=||||||||| targets:1519   GGAUUUUAGCCCCUUCAAUCCCCU   1542 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008682826.2	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*||||||||||=||||||||| targets:1612   GGAUUUUAGCCCCUUCAAUCCCCU   1635 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU957690.1	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*||||||||||=||||||||| targets:1645   GGAUUUUAGCCCCUUCAAUCCCCU   1668 Target Full Sequence	1.5	Zea mays clone 1610264 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682824.2	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*||||||||||=||||||||| targets:1665   GGAUUUUAGCCCCUUCAAUCCCCU   1688 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682823.2	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*||||||||||=||||||||| targets:1711   GGAUUUUAGCCCCUUCAAUCCCCU   1734 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008682825.2	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*||||||||||=||||||||| targets:1833   GGAUUUUAGCCCCUUCAAUCCCCU   1856 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||*||||||||||=||||||||| targets:1107   GGAUUUUAGCCCCUUCAAUCCCCU   1130 Target Full Sequence	1.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
EU945351.1	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||||*||||||||||||*||||| targets:409   GGAAUCUAGCCCCUCCAACCCCCU   432 Target Full Sequence	2.5	Zea mays clone 260481 mRNA sequence	NA	coding protein	psRNATarget
AY108273.1	ncRNA:24   CCUU-A--AAUCGGGGAGGUUAGGGGA   1   |||=-|--||||||||||||||||||| targets:323   GGAGCUGCUUAGCCCCUCCAAUCCCCU   349 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_008672161.2	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   |||||*||||||||||||*||||| targets:1261   GGAAUCUAGCCCCUCCAACCCCCU   1284 Target Full Sequence	2.5	PREDICTED: Zea mays TVP38/TMEM64 family membrane protein YtxB (LOC103647660), mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   *||*||||*||||||||||||||| targets:678   UGAUUUUAUCCCCUCCAAUCCCCU   701 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   *||*||||*||||||||||||||| targets:1558   UGAUUUUAUCCCCUCCAAUCCCCU   1581 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   *||*||||*||||||||||||||| targets:1578   UGAUUUUAUCCCCUCCAAUCCCCU   1601 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   *||*||||*||||||||||||||| targets:1602   UGAUUUUAUCCCCUCCAAUCCCCU   1625 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   *||*||||*||||||||||||||| targets:1635   UGAUUUUAUCCCCUCCAAUCCCCU   1658 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674728.2	ncRNA:24   CCUUAAAUCGGGGAGGUUAGGGGA   1   *||*|||||=|||||||||||*|| targets:696   AGAUUUUAGUCCCUCCAAUCCACU   719 Target Full Sequence	2.5	PREDICTED: Zea mays 60S ribosomal protein L18A (LOC100284168), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:24   CCUU-AAAUCGGGGAGGUUAGGGGA   1   **||-||||*||||||||||||||| targets:1024   AUAACUUUAACCCCUCCAAUCCCCU   1048 Target Full Sequence	1.0	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
BT017268.1	ncRNA:24   CCU-UAAA-UCGGGGAGGUUAGGGGA   1   *||-||||-|*||||||||||||||| targets:903   AGAGAUUUCAUCCCCUCCAAUCCCCU   928 Target Full Sequence	3.0	Zea mays clone EL01N0312A05.c mRNA sequence	NA	coding protein	psRNATarget