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BaseInfo

ncRNA ID novel_zma_miR9113
Species Zea mays
Class miRNA
Genome position Chr1:237122019-237122104 [+]
Reference genome RefGen_v4
Source SRR4237222;SRR1997865;SRR5451006;SRR2089704
Length 24
Mature sequence(if miRNA) 1 - AGGACUGGCACUCGGCAAAGAGGC - 24
Stem-loop(if miRNA) -A   CU         C      GCU              -  A
  GGA  GGCACUCGG AAAGAG   UCUUUGCCGAGUGC CA A
  |||  ||||||||| ||||||   |||||||||||||| || U
  UCU  CCGUGAGCC UUUCUC   AGAAACGGCUCACG GU A
GA   -U         A      --A              A  C
Stem-loop sequence AGGACUGGCACUCGGCAAAGAGGCUUCUUUGCCGAGUGCCAAAUACUGAGCACUCGGCAAAGAACUCUUUACCGAGUGCCUUCUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ237992.1
ncRNA:24   CGGAGAAACGGCUCACGGUCAGGA   1
  **||||||||=|||||||||||*|
targets:7   AACUCUUUGCUGAGUGCCAGUCGU   30

2.5 Sequence 3987 from Patent EP2985353 NA coding protein psRNATarget
HI405862.1
ncRNA:24   CGGAGAAACGGCUCACGGUCAGGA   1
  **||||||||=|||||||||||*|
targets:7   AACUCUUUGCUGAGUGCCAGUCGU   30

2.5 Sequence 3987 from Patent EP2074227 NA coding protein psRNATarget
JB166323.1
ncRNA:24   CGGAGAAACGGCUCACGGUCAGGA   1
  **||||||||=|||||||||||*|
targets:7   AACUCUUUGCUGAGUGCCAGUCGU   30

2.5 Sequence 3987 from Patent EP2559767 NA coding protein psRNATarget