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BaseInfo

ncRNA ID	novel_zma_miR9096
Species	Zea mays
Class	miRNA
Genome position	Chr1:187716794-187716874 [+]
Reference genome	RefGen_v4
Source	SRR4237222;SRR1583942
Length	21
Mature sequence(if miRNA)	1 - CAAUCCACGUGUAUUGAGGUG - 21
Stem-loop(if miRNA)	--     C CG            UAAUGU      UAUUA   CAAUC A  UGUAUUGAGGUG      GGUGUA     U   ||||| |  ||||||||||||      ||||||     U   GUUAG U  ACAUAAUUUCAU      CCACAU     U GA     A AU            CUAAUU      UAAAU
Stem-loop sequence	CAAUCCACGUGUAUUGAGGUGUAAUGUGGUGUAUAUUAUUUUAAAUUACACCUUAAUCUACUUUAAUACAUAUAGAUUGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546594.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||||||||||| targets:1715   CACCUCAAUACACGUGGAUUG   1735 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100502429 (LOC100502429), mRNA	NA	coding protein	psRNATarget
XM_020550625.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||||||||||| targets:2953   CACCUCAAUACACGUGGAUUG   2973 Target Full Sequence	0.0	PREDICTED: Zea mays cation/H(+) antiporter 15-like (LOC109944899), mRNA	NA	coding protein	psRNATarget
XM_008677341.2	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||||||||||| targets:2969   CACCUCAAUACACGUGGAUUG   2989 Target Full Sequence	0.0	PREDICTED: Zea mays cation/H(+) antiporter 15 (LOC103651657), mRNA	NA	coding protein	psRNATarget
LQ235096.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:71   CACCUCAAUACAUGUGGAUUG   91 Target Full Sequence	1.5	Sequence 1091 from Patent EP2985353	NA	coding protein	psRNATarget
JB163427.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:71   CACCUCAAUACAUGUGGAUUG   91 Target Full Sequence	1.5	Sequence 1091 from Patent EP2559767	NA	coding protein	psRNATarget
HI402966.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:71   CACCUCAAUACAUGUGGAUUG   91 Target Full Sequence	1.5	Sequence 1091 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238868.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:75   CACCUCAAUACAUGUGGAUUG   95 Target Full Sequence	1.5	Sequence 4863 from Patent EP2985353	NA	coding protein	psRNATarget
HI406738.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:75   CACCUCAAUACAUGUGGAUUG   95 Target Full Sequence	1.5	Sequence 4863 from Patent EP2074227	NA	coding protein	psRNATarget
JB167199.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:75   CACCUCAAUACAUGUGGAUUG   95 Target Full Sequence	1.5	Sequence 4863 from Patent EP2559767	NA	coding protein	psRNATarget
HI403066.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:72   CACCUCAAUACAUGUGGAUUG   92 Target Full Sequence	1.5	Sequence 1191 from Patent EP2074227	NA	coding protein	psRNATarget
JB163527.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:72   CACCUCAAUACAUGUGGAUUG   92 Target Full Sequence	1.5	Sequence 1191 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235196.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:72   CACCUCAAUACAUGUGGAUUG   92 Target Full Sequence	1.5	Sequence 1191 from Patent EP2985353	NA	coding protein	psRNATarget
EZ069719.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:64   CACCUCAAUACAUGUGGAUUG   84 Target Full Sequence	1.5	TSA: Zea mays contig05355, mRNA sequence	NA	coding protein	psRNATarget
JB163953.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:87   CACCUCAAUACAUGUGGAUUG   107 Target Full Sequence	1.5	Sequence 1617 from Patent EP2559767	NA	coding protein	psRNATarget
HI403492.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:87   CACCUCAAUACAUGUGGAUUG   107 Target Full Sequence	1.5	Sequence 1617 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235622.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:87   CACCUCAAUACAUGUGGAUUG   107 Target Full Sequence	1.5	Sequence 1617 from Patent EP2985353	NA	coding protein	psRNATarget
EU963895.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:991   CACCUCAAUACAUGUGGAUUG   1011 Target Full Sequence	1.5	Zea mays clone 273839 protein SFT2 mRNA, complete cds	NA	coding protein	psRNATarget
BT085111.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||| targets:1202   CACCUCAAUACAUGUGGAUUG   1222 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235181.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   =|||||||||||=|||||||| targets:71   UACCUCAAUACAUGUGGAUUG   91 Target Full Sequence	1.5	Sequence 1176 from Patent EP2985353	NA	coding protein	psRNATarget
HI403051.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   =|||||||||||=|||||||| targets:71   UACCUCAAUACAUGUGGAUUG   91 Target Full Sequence	1.5	Sequence 1176 from Patent EP2074227	NA	coding protein	psRNATarget
JB163512.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   =|||||||||||=|||||||| targets:71   UACCUCAAUACAUGUGGAUUG   91 Target Full Sequence	1.5	Sequence 1176 from Patent EP2559767	NA	coding protein	psRNATarget
JB163822.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||||=||||||=|||||||| targets:73   CACCUUAAUACAUGUGGAUUG   93 Target Full Sequence	2.5	Sequence 1486 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235491.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||||=||||||=|||||||| targets:73   CACCUUAAUACAUGUGGAUUG   93 Target Full Sequence	2.5	Sequence 1486 from Patent EP2985353	NA	coding protein	psRNATarget
HI403321.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||=||||||||=|||||||| targets:73   CACUUCAAUACAUGUGGAUUG   93 Target Full Sequence	2.5	Sequence 1446 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235451.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||=||||||||=|||||||| targets:73   CACUUCAAUACAUGUGGAUUG   93 Target Full Sequence	2.5	Sequence 1446 from Patent EP2985353	NA	coding protein	psRNATarget
HI403361.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||||=||||||=|||||||| targets:73   CACCUUAAUACAUGUGGAUUG   93 Target Full Sequence	2.5	Sequence 1486 from Patent EP2074227	NA	coding protein	psRNATarget
JB163781.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||=||||||||=|||||||| targets:73   CACUUCAAUACAUGUGGAUUG   93 Target Full Sequence	2.5	Sequence 1445 from Patent EP2559767	NA	coding protein	psRNATarget
HI403320.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||=||||||||=|||||||| targets:73   CACUUCAAUACAUGUGGAUUG   93 Target Full Sequence	2.5	Sequence 1445 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235450.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||=||||||||=|||||||| targets:73   CACUUCAAUACAUGUGGAUUG   93 Target Full Sequence	2.5	Sequence 1445 from Patent EP2985353	NA	coding protein	psRNATarget
JB163782.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||=||||||||=|||||||| targets:73   CACUUCAAUACAUGUGGAUUG   93 Target Full Sequence	2.5	Sequence 1446 from Patent EP2559767	NA	coding protein	psRNATarget
HI403123.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   *|||||||||||=|||||||| targets:69   AACCUCAAUACAUGUGGAUUG   89 Target Full Sequence	1.5	Sequence 1248 from Patent EP2074227	NA	coding protein	psRNATarget
JB163584.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   *|||||||||||=|||||||| targets:69   AACCUCAAUACAUGUGGAUUG   89 Target Full Sequence	1.5	Sequence 1248 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235253.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   *|||||||||||=|||||||| targets:69   AACCUCAAUACAUGUGGAUUG   89 Target Full Sequence	1.5	Sequence 1248 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235268.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   *|||||||||||=|||||||| targets:72   GACCUCAAUACAUGUGGAUUG   92 Target Full Sequence	1.5	Sequence 1263 from Patent EP2985353	NA	coding protein	psRNATarget
JB163599.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   *|||||||||||=|||||||| targets:72   GACCUCAAUACAUGUGGAUUG   92 Target Full Sequence	1.5	Sequence 1263 from Patent EP2559767	NA	coding protein	psRNATarget
HI403138.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   *|||||||||||=|||||||| targets:72   GACCUCAAUACAUGUGGAUUG   92 Target Full Sequence	1.5	Sequence 1263 from Patent EP2074227	NA	coding protein	psRNATarget
EU941642.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||* targets:21   CACCUCAAUACAUGUGGAUUU   41 Target Full Sequence	2.5	Zea mays clone 1468727 mRNA sequence	NA	coding protein	psRNATarget
NM_001156128.2	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||* targets:894   CACCUCAAUACAUGUGGAUUU   914 Target Full Sequence	2.5	Zea mays protein SFT2 (LOC100283226), mRNA	NA	coding protein	psRNATarget
BT085755.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||=|||||||* targets:894   CACCUCAAUACAUGUGGAUUU   914 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds	NA	coding protein	psRNATarget
JB167693.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||*|||||||| targets:34   CACCUCAAUACAAGUGGAUUG   54 Target Full Sequence	1.5	Sequence 5357 from Patent EP2559767	NA	coding protein	psRNATarget
HI407232.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||*|||||||| targets:34   CACCUCAAUACAAGUGGAUUG   54 Target Full Sequence	1.5	Sequence 5357 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239362.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||*|||||||| targets:34   CACCUCAAUACAAGUGGAUUG   54 Target Full Sequence	1.5	Sequence 5357 from Patent EP2985353	NA	coding protein	psRNATarget
EU963469.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ||||||||||||*|||||||| targets:984   CACCUCAAUACAAGUGGAUUG   1004 Target Full Sequence	1.5	Zea mays clone 263014 mRNA sequence	NA	coding protein	psRNATarget
JB163536.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||*||||||||=|||||||| targets:72   CACAUCAAUACAUGUGGAUUG   92 Target Full Sequence	2.5	Sequence 1200 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235205.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||*||||||||=|||||||| targets:72   CACAUCAAUACAUGUGGAUUG   92 Target Full Sequence	2.5	Sequence 1200 from Patent EP2985353	NA	coding protein	psRNATarget
HI403075.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||*||||||||=|||||||| targets:72   CACAUCAAUACAUGUGGAUUG   92 Target Full Sequence	2.5	Sequence 1200 from Patent EP2074227	NA	coding protein	psRNATarget
JB163837.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||*||||||||=|||||||| targets:73   CACAUCAAUACAUGUGGAUUG   93 Target Full Sequence	2.5	Sequence 1501 from Patent EP2559767	NA	coding protein	psRNATarget
HI403376.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||*||||||||=|||||||| targets:73   CACAUCAAUACAUGUGGAUUG   93 Target Full Sequence	2.5	Sequence 1501 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235506.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||*||||||||=|||||||| targets:73   CACAUCAAUACAUGUGGAUUG   93 Target Full Sequence	2.5	Sequence 1501 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235446.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   *|||||||||||=|||||||* targets:24   GACCUCAAUACAUGUGGAUUA   44 Target Full Sequence	2.5	Sequence 1441 from Patent EP2985353	NA	coding protein	psRNATarget
HI403316.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   *|||||||||||=|||||||* targets:24   GACCUCAAUACAUGUGGAUUA   44 Target Full Sequence	2.5	Sequence 1441 from Patent EP2074227	NA	coding protein	psRNATarget
JB163777.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   *|||||||||||=|||||||* targets:24   GACCUCAAUACAUGUGGAUUA   44 Target Full Sequence	2.5	Sequence 1441 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239297.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   *|||||||*|||||||||||| targets:76   AACCUCAACACACGUGGAUUG   96 Target Full Sequence	1.5	Sequence 5292 from Patent EP2985353	NA	coding protein	psRNATarget
HI407167.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   *|||||||*|||||||||||| targets:76   AACCUCAACACACGUGGAUUG   96 Target Full Sequence	1.5	Sequence 5292 from Patent EP2074227	NA	coding protein	psRNATarget
JB167628.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   *|||||||*|||||||||||| targets:76   AACCUCAACACACGUGGAUUG   96 Target Full Sequence	1.5	Sequence 5292 from Patent EP2559767	NA	coding protein	psRNATarget
JB163738.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   =|*|||||||||=|||||||| targets:95   UAGCUCAAUACAUGUGGAUUG   115 Target Full Sequence	2.5	Sequence 1402 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235407.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   =|*|||||||||=|||||||| targets:95   UAGCUCAAUACAUGUGGAUUG   115 Target Full Sequence	2.5	Sequence 1402 from Patent EP2985353	NA	coding protein	psRNATarget
HI403277.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   =|*|||||||||=|||||||| targets:95   UAGCUCAAUACAUGUGGAUUG   115 Target Full Sequence	2.5	Sequence 1402 from Patent EP2074227	NA	coding protein	psRNATarget
EU953910.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |*=||||||||||||||=||| targets:187   CCUCUCAAUACACGUGGGUUG   207 Target Full Sequence	2.5	Zea mays clone 1449206 mRNA sequence	NA	coding protein	psRNATarget
BT064276.2	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   |||*||||||||||||*|||| targets:1534   CACAUCAAUACACGUGUAUUG   1554 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0155A03 mRNA, complete cds	NA	coding protein	psRNATarget
EZ089181.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ==|||||||||||*||||||* targets:411   UGCCUCAAUACACAUGGAUUA   431 Target Full Sequence	2.5	TSA: Zea mays contig24827, mRNA sequence	NA	coding protein	psRNATarget
XM_020548226.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ==|||||||||||*||||||* targets:725   UGCCUCAAUACACAUGGAUUA   745 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109939175 (LOC109939175), mRNA	NA	coding protein	psRNATarget
XM_020548228.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ==|||||||||||*||||||* targets:752   UGCCUCAAUACACAUGGAUUA   772 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109943978 (LOC109943978), mRNA	NA	coding protein	psRNATarget
XM_020548227.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ==|||||||||||*||||||* targets:803   UGCCUCAAUACACAUGGAUUA   823 Target Full Sequence	2.5	PREDICTED: Zea mays DNA-directed RNA polymerase III subunit RPC9-like (LOC109943977), mRNA	NA	coding protein	psRNATarget
AY109209.2	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ==|||||||||||*||||||* targets:993   UGCCUCAAUACACAUGGAUUA   1013 Target Full Sequence	2.5	Zea mays PCO083694 mRNA sequence	NA	coding protein	psRNATarget
EU959927.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ==|||||||||||*||||||* targets:1031   UGCCUCAAUACACAUGGAUUA   1051 Target Full Sequence	2.5	Zea mays clone 220699 calcitonin peptide-receptor component protein mRNA, complete cds	NA	coding protein	psRNATarget
EU953864.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ==|||||||||||*||||||* targets:1006   UGCCUCAAUACACAUGGAUUA   1026 Target Full Sequence	2.5	Zea mays clone 1447962 calcitonin peptide-receptor component protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153718.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ==|||||||||||*||||||* targets:1016   UGCCUCAAUACACAUGGAUUA   1036 Target Full Sequence	2.5	Zea mays RNA polymerase II Rpb4 core protein (umc1549a), mRNA	NA	coding protein	psRNATarget
BT065432.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ==|||||||||||*||||||* targets:1016   UGCCUCAAUACACAUGGAUUA   1036 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0153M09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540489.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ==|||||||||||*||||||* targets:1047   UGCCUCAAUACACAUGGAUUA   1067 Target Full Sequence	2.5	PREDICTED: Zea mays RNA polymerase II Rpb4 core protein (umc1549a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540490.1	ncRNA:21   GUGGAGUUAUGUGCACCUAAC   1   ==|||||||||||*||||||* targets:1097   UGCCUCAAUACACAUGGAUUA   1117 Target Full Sequence	2.5	PREDICTED: Zea mays RNA polymerase II Rpb4 core protein (umc1549a), transcript variant X2, mRNA	NA	coding protein	psRNATarget