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BaseInfo

ncRNA ID novel_zma_miR9089
Species Zea mays
Class miRNA
Genome position Chr9:123774481-123774587 [-]
Reference genome RefGen_v4
Source SRR4237222
Length 24
Mature sequence(if miRNA) 84 - AUUAGUUAGAGAGAGCCCAGAGCU - 107
Stem-loop(if miRNA) --      U  A AG       A   -   AA    AUA   A   AU         U
  AUUAGU AG G  AGCCCAG GCU CUA  UACU   UCU UCU  CUAUAUAUA A
  |||||| || |  ||||||| ||| |||  ||||   ||| |||  |||||||||
  UAAUCA UC C  UCGGGUC CGA GGU  AUGG   AGA AGG  GAUAUAUAU U
GG      -  C CU       C   A   -A    ---   -   --         A
Stem-loop sequence AUUAGUUAGAGAGAGCCCAGAGCUCUAAAUACUAUAUCUAUCUAUCUAUAUAUAUAUAUAUAUAUAGGGAAGAGGUAAUGGAAGCCCUGGGCUUCCCCUACUAAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020541004.1
ncRNA:24   UCGAGACCCGAGAGAGAUUGAUUA   1
  |||*||||||||||||||||||**
targets:36   AGCCCUGGGCUCUCUCUAACUACA   59

2.5 PREDICTED: Zea mays uncharacterized LOC109940773 (LOC109940773), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020541002.1
ncRNA:24   UCGAGACCCGAGAGAGAUUGAUUA   1
  |||*||||||||||||||||||**
targets:36   AGCCCUGGGCUCUCUCUAACUACA   59

2.5 PREDICTED: Zea mays uncharacterized LOC109940773 (LOC109940773), transcript variant X1, mRNA NA coding protein psRNATarget