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BaseInfo

ncRNA ID	novel_zma_miR9083
Species	Zea mays
Class	miRNA
Genome position	Chr9:157023951-157024084 [-]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	1 - CACCGGACUGUCCGGUGCACCCGG - 24
Stem-loop(if miRNA)	--  AG         U        UG        --          G  ----A  --  UGCAACGGUCG   GG  GCACCGGAC GUCCGGUG  CACCGGAC  UGUCCGGUGC CC     GA  UC           G   ||  ||||||||| ||||||||  ||||||||  |||||||||| ||     ||  ||           C   CC  CGUGGCCUG CAGGCCAC  GUGGCCUG  ACAGGCCACG GG     GA  GG           U GG  CA         U        GU        UG          -  CUAAA  AA  AAUUGUCCGCG
Stem-loop sequence	GGAGGCACCGGACUGUCCGGUGUGCACCGGACUGUCCGGUGCGCCAGAUCUGCAACGGUCGGCUGCGCCUGUUAAGGAAAGAAAUCGGGCACCGGACAGUGUCCGGUGUGCACCGGACUGUCCGGUGCACCCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT065201.2	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   =||||||||||||||||||||||| targets:585   UCGGGUGCACCGGACAGUCCGGUG   608 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   GGCCCAC---GUGGCCUGUCAGGCCAC   1   ||||*||---||||||||||||||||| targets:811   CCGGUUGUCCCACCGGACAGUCCGGUG   837 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:741   CCGG-UGCACACCGGACAGUCCGGUG   765 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   =||||||||||||||||||||||| targets:137   UCGGGUGCACCGGACAGUCCGGUG   160 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:282   CCGG-UGCACACCGGACAGUCCGGUG   306 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   GGCCCACG---UGGCCUGUCAGGCCAC   1   ||||-|||---|||||||||||||||| targets:352   CCGG-UGCCUCACCGGACAGUCCGGUG   377 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
EU950973.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||||||||||| targets:181   CCGGUGUGCACCGGACAGUCCGGUG   205 Target Full Sequence	0.0	Zea mays clone 677173 mRNA sequence	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   *=|||||||||||||||||||||| targets:588   AUGGGUGCACCGGACAGUCCGGUG   611 Target Full Sequence	0.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   GGC--CCACGUGGCCUGUCAGGCCAC   1   |||--||||||||||||||||||||| targets:820   CCGCUGGUGCACCGGACAGUCCGGUG   845 Target Full Sequence	0.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   *=|||||||||||||||||||||| targets:588   AUGGGUGCACCGGACAGUCCGGUG   611 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   GGC--CCACGUGGCCUGUCAGGCCAC   1   |||--||||||||||||||||||||| targets:820   CCGCUGGUGCACCGGACAGUCCGGUG   845 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   ||*||||||||||||||||||||| targets:92   CCUGGUGCACCGGACAGUCCGGUG   115 Target Full Sequence	0.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   *|*||**||||||||||||||||| targets:11   ACUGGCACACCGGACAGUCCGGUG   34 Target Full Sequence	2.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   ||*||||||||||||||||||||| targets:92   CCUGGUGCACCGGACAGUCCGGUG   115 Target Full Sequence	0.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   *|*||**||||||||||||||||| targets:11   ACUGGCACACCGGACAGUCCGGUG   34 Target Full Sequence	2.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   ||*||||||||||||||||||||| targets:92   CCUGGUGCACCGGACAGUCCGGUG   115 Target Full Sequence	0.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   *|*||**||||||||||||||||| targets:11   ACUGGCACACCGGACAGUCCGGUG   34 Target Full Sequence	2.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   ||*||||||||||||||||||||| targets:762   CCUGGUGCACCGGACAGUCCGGUG   785 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   GGCCCACG---UGGCCUGUCAGGCCAC   1   ||||-|||---|||||||||||||||| targets:679   CCGG-UGCUUCACCGGACAGUCCGGUG   704 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   GGC---CCACGUGGCCUGUCAGGCCAC   1   =||---||*||||||||||||=||||| targets:412   UCGCAUGGCGCACCGGACAGUUCGGUG   438 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   ||*||||||||||||||||||||| targets:829   CCUGGUGCACCGGACAGUCCGGUG   852 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   GGC---CCACGUGGCCUGUCAGGCCAC   1   =||---||||||||||||||||=|||| targets:403   UCGAGUGGUGCACCGGACAGUCUGGUG   429 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   GGCCCAC---GUGGCCUGUCAGGCCAC   1   ||||-||---||||||||||||||||| targets:646   CCGG-UGAACCACCGGACAGUCCGGUG   671 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
HI409931.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||||||||||||*|||||||| targets:13   CUGGGUGCACCGGACUGUCCGGUG   36 Target Full Sequence	1.5	Sequence 8056 from Patent EP2074227	NA	coding protein	psRNATarget
JB170392.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||||||||||||*|||||||| targets:13   CUGGGUGCACCGGACUGUCCGGUG   36 Target Full Sequence	1.5	Sequence 8056 from Patent EP2559767	NA	coding protein	psRNATarget
JB169821.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||||||||||||*|||||||| targets:13   CUGGGUGCACCGGACUGUCCGGUG   36 Target Full Sequence	1.5	Sequence 7485 from Patent EP2559767	NA	coding protein	psRNATarget
HI409360.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||||||||||||*|||||||| targets:13   CUGGGUGCACCGGACUGUCCGGUG   36 Target Full Sequence	1.5	Sequence 7485 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241490.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||||||||||||*|||||||| targets:13   CUGGGUGCACCGGACUGUCCGGUG   36 Target Full Sequence	1.5	Sequence 7485 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242061.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||||||||||||*|||||||| targets:13   CUGGGUGCACCGGACUGUCCGGUG   36 Target Full Sequence	1.5	Sequence 8056 from Patent EP2985353	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   GGC---CCACGUGGCCUGUCAGGCCAC   1   =||---||||||||||||||||||||| targets:145   UCGAGUGGUGCACCGGACAGUCCGGUG   171 Target Full Sequence	0.0	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   GGC---CCACGUGGCCUGUCAGGCCAC   1   =||---||||||||||||||||||||| targets:145   UCGAGUGGUGCACCGGACAGUCCGGUG   171 Target Full Sequence	0.0	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   GGC---CCACGUGGCCUGUCAGGCCAC   1   =||---||||||||||||||||||||| targets:145   UCGAGUGGUGCACCGGACAGUCCGGUG   171 Target Full Sequence	0.0	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
BT037301.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||||||||||||*|||||||| targets:857   CUGGGUGCACCGGACUGUCCGGUG   880 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0161O03 mRNA, complete cds	NA	coding protein	psRNATarget
BT037301.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|||||||||||*|||||||| targets:978   CCGGUGGUGCACCGGACUGUCCGGUG   1003 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0161O03 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   =||||*|||||||||||||||||| targets:496   UCGGGCGCACCGGACAGUCCGGUG   519 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:621   CCGG-UGCACACCGGACAGUCCGGUG   645 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:735   CCGG-UGCACACCGGACAGUCCGGUG   759 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:838   CCGG-UGCACACCGGACAGUCCGGUG   862 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   =||||*|||||||||||||||||| targets:496   UCGGGCGCACCGGACAGUCCGGUG   519 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:621   CCGG-UGCACACCGGACAGUCCGGUG   645 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:735   CCGG-UGCACACCGGACAGUCCGGUG   759 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:838   CCGG-UGCACACCGGACAGUCCGGUG   862 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT019242.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||||||||||||*|||||||| targets:634   CUGGGUGCACCGGACUGUCCGGUG   657 Target Full Sequence	1.5	Zea mays clone Contig915.F mRNA sequence	NA	coding protein	psRNATarget
NM_001309905.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||||||||||||*|||||||| targets:1029   CUGGGUGCACCGGACUGUCCGGUG   1052 Target Full Sequence	1.5	Zea mays uncharacterized LOC100216760 (LOC100216760), mRNA	NA	coding protein	psRNATarget
NM_001309905.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|||||||||||*|||||||| targets:1150   CCGGUGGUGCACCGGACUGUCCGGUG   1175 Target Full Sequence	1.5	Zea mays uncharacterized LOC100216760 (LOC100216760), mRNA	NA	coding protein	psRNATarget
EU960150.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||||||||||||*|||||||| targets:1199   CUGGGUGCACCGGACUGUCCGGUG   1222 Target Full Sequence	1.5	Zea mays clone 222169 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU960150.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|||||||||||*|||||||| targets:1320   CCGGUGGUGCACCGGACUGUCCGGUG   1345 Target Full Sequence	1.5	Zea mays clone 222169 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT064005.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||||||||||||*|||||||| targets:1288   CUGGGUGCACCGGACUGUCCGGUG   1311 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds	NA	coding protein	psRNATarget
BT064005.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|||||||||||*|||||||| targets:1409   CCGGUGGUGCACCGGACUGUCCGGUG   1434 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175099.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||||||||||||*|||||||| targets:1288   CUGGGUGCACCGGACUGUCCGGUG   1311 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA	NA	coding protein	psRNATarget
NM_001175099.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|||||||||||*|||||||| targets:1409   CCGGUGGUGCACCGGACUGUCCGGUG   1434 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   =||||*|||||||||||||||||| targets:484   UCGGGCGCACCGGACAGUCCGGUG   507 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:598   CCGG-UGCACACCGGACAGUCCGGUG   622 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:696   CCGG-UGCACACCGGACAGUCCGGUG   720 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   =||||*|||||||||||||||||| targets:484   UCGGGCGCACCGGACAGUCCGGUG   507 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:598   CCGG-UGCACACCGGACAGUCCGGUG   622 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:696   CCGG-UGCACACCGGACAGUCCGGUG   720 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   GGCCCAC---GUGGCCUGUCAGGCCAC   1   =||||||---||||||||||||||||| targets:176   UCGGGUGGAGCACCGGACAGUCCGGUG   202 Target Full Sequence	3.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:408   CCGG-UGCACACCGGACAGUCCGGUG   432 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   =**|||||||--|||||||||||||| targets:293   UACGGUGCACACCGGACAGUCCGGUG   318 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
NM_001176009.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||||||||||||*|||||||| targets:2165   CUGGGUGCACCGGACUGUCCGGUG   2188 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383353 (LOC100383353), mRNA	NA	coding protein	psRNATarget
NM_001176009.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   *****||||||||||*|||||||| targets:2476   AAAUCUGCACCGGACUGUCCGGUG   2499 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383353 (LOC100383353), mRNA	NA	coding protein	psRNATarget
BT066975.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||||||||||||*|||||||| targets:2165   CUGGGUGCACCGGACUGUCCGGUG   2188 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0133B08 mRNA, complete cds	NA	coding protein	psRNATarget
BT066975.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   *****||||||||||*|||||||| targets:2476   AAAUCUGCACCGGACUGUCCGGUG   2499 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0133B08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   =||||*|||||||||||||||||| targets:4378   UCGGGCGCACCGGACAGUCCGGUG   4401 Target Full Sequence	1.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:4493   CCGG-UGCACACCGGACAGUCCGGUG   4517 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:4608   CCGG-UGCACACCGGACAGUCCGGUG   4632 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
JB169740.1	ncRNA:24   GGCC-CACGUGGCCUGU-CAGGCCAC   1   ||||-||||||||||||-|||||||| targets:11   CCGGUGUGCACCGGACAUGUCCGGUG   36 Target Full Sequence	3.0	Sequence 7404 from Patent EP2559767	NA	coding protein	psRNATarget
HI409279.1	ncRNA:24   GGCC-CACGUGGCCUGU-CAGGCCAC   1   ||||-||||||||||||-|||||||| targets:11   CCGGUGUGCACCGGACAUGUCCGGUG   36 Target Full Sequence	3.0	Sequence 7404 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241409.1	ncRNA:24   GGCC-CACGUGGCCUGU-CAGGCCAC   1   ||||-||||||||||||-|||||||| targets:11   CCGGUGUGCACCGGACAUGUCCGGUG   36 Target Full Sequence	3.0	Sequence 7404 from Patent EP2985353	NA	coding protein	psRNATarget
EU964336.1	ncRNA:24   GGCC-CACGUGGCCUGU-CAGGCCAC   1   ||||-||||||||||||-|||||||| targets:473   CCGGUGUGCACCGGACAUGUCCGGUG   498 Target Full Sequence	3.0	Zea mays clone 278065 mRNA sequence	NA	coding protein	psRNATarget
EU964336.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   |=||-|||||||||||*|||||||| targets:570   CUGGUGUGCACCGGACUGUCCGGUG   594 Target Full Sequence	1.5	Zea mays clone 278065 mRNA sequence	NA	coding protein	psRNATarget
EU964665.1	ncRNA:24   GGCC-CACGUGGCCUGU-CAGGCCAC   1   ||||-||||||||||||-|||||||| targets:1006   CCGGUGUGCACCGGACAUGUCCGGUG   1031 Target Full Sequence	3.0	Zea mays clone 280715 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU964665.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:892   CCGGUGUGCACCGGACUGUCCGGUG   916 Target Full Sequence	1.5	Zea mays clone 280715 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU964665.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:1102   CCGGUGUGCACCGGACUGUCCGGUG   1126 Target Full Sequence	1.5	Zea mays clone 280715 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176974.1	ncRNA:24   GGCC-CACGUGGCCUGU-CAGGCCAC   1   ||||-||||||||||||-|||||||| targets:986   CCGGUGUGCACCGGACAUGUCCGGUG   1011 Target Full Sequence	3.0	Zea mays uncharacterized LOC100384437 (LOC100384437), mRNA	NA	coding protein	psRNATarget
NM_001176974.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:872   CCGGUGUGCACCGGACUGUCCGGUG   896 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384437 (LOC100384437), mRNA	NA	coding protein	psRNATarget
NM_001176974.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:1082   CCGGUGUGCACCGGACUGUCCGGUG   1106 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384437 (LOC100384437), mRNA	NA	coding protein	psRNATarget
BT070124.1	ncRNA:24   GGCC-CACGUGGCCUGU-CAGGCCAC   1   ||||-||||||||||||-|||||||| targets:986   CCGGUGUGCACCGGACAUGUCCGGUG   1011 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0099M20 mRNA, complete cds	NA	coding protein	psRNATarget
BT070124.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:872   CCGGUGUGCACCGGACUGUCCGGUG   896 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0099M20 mRNA, complete cds	NA	coding protein	psRNATarget
BT070124.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:1082   CCGGUGUGCACCGGACUGUCCGGUG   1106 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0099M20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152486.1	ncRNA:24   GGCC-CACGUGGCCUGU-CAGGCCAC   1   ||||-||||||||||||-|||||||| targets:1351   CCGGUGUGCACCGGACAUGUCCGGUG   1376 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100279484), mRNA	NA	coding protein	psRNATarget
NM_001152486.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:1448   CCGGUGUGCACCGGACUGUCCGGUG   1472 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100279484), mRNA	NA	coding protein	psRNATarget
BT054327.1	ncRNA:24   GGCC-CACGUGGCCUGU-CAGGCCAC   1   ||||-||||||||||||-|||||||| targets:1351   CCGGUGUGCACCGGACAUGUCCGGUG   1376 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0334B17 mRNA, complete cds	NA	coding protein	psRNATarget
BT054327.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:1448   CCGGUGUGCACCGGACUGUCCGGUG   1472 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0334B17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   *||||*|||||||||||||||||| targets:331   ACGGGCGCACCGGACAGUCCGGUG   354 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:446   CCGG-UGCACACCGGACAGUCCGGUG   470 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:560   CCGG-UGCACACCGGACAGUCCGGUG   584 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   *||||*|||||||||||||||||| targets:331   ACGGGCGCACCGGACAGUCCGGUG   354 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:446   CCGG-UGCACACCGGACAGUCCGGUG   470 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:560   CCGG-UGCACACCGGACAGUCCGGUG   584 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
LQ241481.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-||*||||||||||||||||| targets:29   CCGGUGUACACCGGACAGUCCGGUG   53 Target Full Sequence	1.0	Sequence 7476 from Patent EP2985353	NA	coding protein	psRNATarget
HI409351.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-||*||||||||||||||||| targets:29   CCGGUGUACACCGGACAGUCCGGUG   53 Target Full Sequence	1.0	Sequence 7476 from Patent EP2074227	NA	coding protein	psRNATarget
JB169812.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-||*||||||||||||||||| targets:29   CCGGUGUACACCGGACAGUCCGGUG   53 Target Full Sequence	1.0	Sequence 7476 from Patent EP2559767	NA	coding protein	psRNATarget
EZ079086.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:50   CCGGUGUGCACCGGACUGUCCGGUG   74 Target Full Sequence	1.5	TSA: Zea mays contig14725, mRNA sequence	NA	coding protein	psRNATarget
BT065862.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|||||||||||*|||||||| targets:1288   CCGGUGGUGCACCGGACUGUCCGGUG   1313 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0155J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175661.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|||||||||||*|||||||| targets:1288   CCGGUGGUGCACCGGACUGUCCGGUG   1313 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382977 (LOC100382977), mRNA	NA	coding protein	psRNATarget
EZ049532.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:49   CCGGUGUGCACCGGACUGUCCGGUG   73 Target Full Sequence	1.5	TSA: Zea mays contig50650, mRNA sequence	NA	coding protein	psRNATarget
NM_001152406.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   =|||--|||||||||||*|||||||| targets:1558   UCGGUGGUGCACCGGACUGUCCGGUG   1583 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279393 (LOC100279393), mRNA	NA	coding protein	psRNATarget
BT054171.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   =|||--|||||||||||*|||||||| targets:1558   UCGGUGGUGCACCGGACUGUCCGGUG   1583 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0148C07 mRNA, complete cds	NA	coding protein	psRNATarget
EU971710.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:218   CCGGUGUGCACCGGACUGUCCGGUG   242 Target Full Sequence	1.5	Zea mays clone 369445 mRNA sequence	NA	coding protein	psRNATarget
EU971710.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:413   CCGGUGUGCACCGGACUGUCCGGUG   437 Target Full Sequence	1.5	Zea mays clone 369445 mRNA sequence	NA	coding protein	psRNATarget
EU971710.1	ncRNA:24   GGCCCACGUGGCCUGU-CAGGCCAC   1   |=|*||||||||||||-|||||||| targets:317   CUGUGUGCACCGGACAUGUCCGGUG   341 Target Full Sequence	3.0	Zea mays clone 369445 mRNA sequence	NA	coding protein	psRNATarget
EU948808.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:767   CCGGUGUGCACCGGACUGUCCGGUG   791 Target Full Sequence	1.5	Zea mays clone 385792 mRNA sequence	NA	coding protein	psRNATarget
EU948808.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-||*||||||||*|||||||| targets:523   CCGGUGUACACCGGACUGUCCGGUG   547 Target Full Sequence	2.5	Zea mays clone 385792 mRNA sequence	NA	coding protein	psRNATarget
BT036301.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:1001   CCGGUGUGCACCGGACUGUCCGGUG   1025 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds	NA	coding protein	psRNATarget
BT036301.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-||*||||||||*|||||||| targets:826   CCGGUGUACACCGGACUGUCCGGUG   850 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds	NA	coding protein	psRNATarget
BT036301.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   **|||*|||||||||*|||||||| targets:906   AAGGGGGCACCGGACUGUCCGGUG   929 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds	NA	coding protein	psRNATarget
EZ071967.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|||||||||||*|||||||| targets:47   CCGGUGGUGCACCGGACUGUCCGGUG   72 Target Full Sequence	1.5	TSA: Zea mays contig07604, mRNA sequence	NA	coding protein	psRNATarget
EZ105730.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|||||||||||*|||||||| targets:59   CCGGUGGUGCACCGGACUGUCCGGUG   84 Target Full Sequence	1.5	TSA: Zea mays contig41388, mRNA sequence	NA	coding protein	psRNATarget
BT069667.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:1509   CCGGUGUGCACCGGACUGUCCGGUG   1533 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds	NA	coding protein	psRNATarget
BT069667.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:1753   CCGGUGUGCACCGGACUGUCCGGUG   1777 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176839.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:1509   CCGGUGUGCACCGGACUGUCCGGUG   1533 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA	NA	coding protein	psRNATarget
NM_001176839.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|||||||||||*|||||||| targets:1753   CCGGUGUGCACCGGACUGUCCGGUG   1777 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA	NA	coding protein	psRNATarget
HI409994.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|||||||||||*|||||||| targets:108   CCGGUGGUGCACCGGACUGUCCGGUG   133 Target Full Sequence	1.5	Sequence 8119 from Patent EP2074227	NA	coding protein	psRNATarget
JB170455.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|||||||||||*|||||||| targets:108   CCGGUGGUGCACCGGACUGUCCGGUG   133 Target Full Sequence	1.5	Sequence 8119 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242124.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|||||||||||*|||||||| targets:108   CCGGUGGUGCACCGGACUGUCCGGUG   133 Target Full Sequence	1.5	Sequence 8119 from Patent EP2985353	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   ***||**||||||||||||||||| targets:95   GGUGGCACACCGGACAGUCCGGUG   118 Target Full Sequence	2.0	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
EZ108756.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   *=|||*|||||||||||||||||| targets:145   AUGGGCGCACCGGACAGUCCGGUG   168 Target Full Sequence	1.0	TSA: Zea mays contig44415, mRNA sequence	NA	coding protein	psRNATarget
EZ109324.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|||||||||||*|||||||| targets:33   CCGGUGGUGCACCGGACUGUCCGGUG   58 Target Full Sequence	1.5	TSA: Zea mays contig44983, mRNA sequence	NA	coding protein	psRNATarget
EU962912.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|||||||||||*|||||||| targets:420   CCGGUGGUGCACCGGACUGUCCGGUG   445 Target Full Sequence	1.5	Zea mays clone 246496 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU962912.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--||||||=||||*|||||||| targets:596   CCGGUGGUGCACUGGACCGUCCGGUG   621 Target Full Sequence	2.5	Zea mays clone 246496 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   ||*||*|||||||||||||||||| targets:779   CCUGGCGCACCGGACAGUCCGGUG   802 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   GGCCCAC---GUGGCCUGUCAGGCCAC   1   =||*|||---||||||||||||||||| targets:487   UCGAGUGGCGCACCGGACAGUCCGGUG   513 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   ||*||*|||||||||||||||||| targets:779   CCUGGCGCACCGGACAGUCCGGUG   802 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   GGCCCAC---GUGGCCUGUCAGGCCAC   1   =||*|||---||||||||||||||||| targets:487   UCGAGUGGCGCACCGGACAGUCCGGUG   513 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT038885.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   ***||||||||||||=|||||||| targets:933   AAUGGUGCACCGGACGGUCCGGUG   956 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds	NA	coding protein	psRNATarget
BT038885.1	ncRNA:24   GGCCCACG---UGGCCUGUCAGGCCAC   1   |||*-|||---|||||||||||||||| targets:1026   CCGA-UGCGCCACCGGACAGUCCGGUG   1051 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds	NA	coding protein	psRNATarget
EZ103080.1	ncRNA:24   GGCCCACGUGGCCUGU-CAGGCCAC   1   =|*|||||||||||||-|||||||| targets:62   UCUGGUGCACCGGACAUGUCCGGUG   86 Target Full Sequence	3.0	TSA: Zea mays contig38737, mRNA sequence	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   ||*||||||||*|||||||||||| targets:496   CCUGGUGCACCUGACAGUCCGGUG   519 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   ||*||||||||*|||||||||||| targets:496   CCUGGUGCACCUGACAGUCCGGUG   519 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   ||*||*|||||||||||||||||| targets:504   CCUGGCGCACCGGACAGUCCGGUG   527 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:713   CCGG-UGCACACCGGACAGUCCGGUG   737 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   GGC--CCACGUGGCCUGUCAGGCCAC   1   *||--||*|||||||||||||||||| targets:598   ACGUUGGCGCACCGGACAGUCCGGUG   623 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   ||*||*|||||||||||||||||| targets:504   CCUGGCGCACCGGACAGUCCGGUG   527 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:713   CCGG-UGCACACCGGACAGUCCGGUG   737 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   GGC--CCACGUGGCCUGUCAGGCCAC   1   *||--||*|||||||||||||||||| targets:598   ACGUUGGCGCACCGGACAGUCCGGUG   623 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
EU968231.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   ***||||||||||||=|||||||| targets:1304   AAUGGUGCACCGGACGGUCCGGUG   1327 Target Full Sequence	1.5	Zea mays clone 317172 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968231.1	ncRNA:24   GGCCCACG---UGGCCUGUCAGGCCAC   1   |||*-|||---|||||||||||||||| targets:1397   CCGA-UGCGCCACCGGACAGUCCGGUG   1422 Target Full Sequence	3.0	Zea mays clone 317172 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ242062.1	ncRNA:24   GGCCCAC---GUGGCCUGUCAGGCCAC   1   =|*||||---||||||||||||||||| targets:27   UCUGGUGGCCCACCGGACAGUCCGGUG   53 Target Full Sequence	3.0	Sequence 8057 from Patent EP2985353	NA	coding protein	psRNATarget
HI409932.1	ncRNA:24   GGCCCAC---GUGGCCUGUCAGGCCAC   1   =|*||||---||||||||||||||||| targets:27   UCUGGUGGCCCACCGGACAGUCCGGUG   53 Target Full Sequence	3.0	Sequence 8057 from Patent EP2074227	NA	coding protein	psRNATarget
JB170393.1	ncRNA:24   GGCCCAC---GUGGCCUGUCAGGCCAC   1   =|*||||---||||||||||||||||| targets:27   UCUGGUGGCCCACCGGACAGUCCGGUG   53 Target Full Sequence	3.0	Sequence 8057 from Patent EP2559767	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:469   CCGG-UGCACACCGGACAGUCCGGUG   493 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:599   CCGG-UGCACACCGGACAGUCCGGUG   623 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   =|*||*|||||||||||||||||| targets:375   UCUGGCGCACCGGACAGUCCGGUG   398 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
EU943461.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   |=||--|||||||||||*|||||||| targets:1394   CUGGUGGUGCACCGGACUGUCCGGUG   1419 Target Full Sequence	1.5	Zea mays clone 1624403 mRNA sequence	NA	coding protein	psRNATarget
EU943461.1	ncRNA:24   GGC-CCACGUGGCCUGUCAGGCCAC   1   *||-||*|||||||||*|||||||| targets:1175   GCGAGGAGCACCGGACUGUCCGGUG   1199 Target Full Sequence	2.5	Zea mays clone 1624403 mRNA sequence	NA	coding protein	psRNATarget
EZ066204.1	ncRNA:24   GGC---CCACGUGGCCUGUCAGGCCAC   1   =||---||*|||||||||||||||||| targets:87   UCGCAUGGCGCACCGGACAGUCCGGUG   113 Target Full Sequence	1.0	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   GGCCCACGUG--GCCUGUCAGGCCAC   1   ||||-|||||--|||||||||||||| targets:1398   CCGG-UGCACACCGGACAGUCCGGUG   1422 Target Full Sequence	2.5	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   GGCCCACG---UGGCCUGUCAGGCCAC   1   =|*|||||---|||||||||||||||| targets:1467   UCUGGUGCCUCACCGGACAGUCCGGUG   1493 Target Full Sequence	3.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
U41079.1	ncRNA:24   GGCCCAC---GUGGCCUGUCAGGCCAC   1   ||||-||---||||||||||||||||| targets:23   CCGG-UGACUCACCGGACAGUCCGGUG   48 Target Full Sequence	3.0	Zea mays copia-type retroelement PREM-2, partial sequence	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||*|||||||||*|||||||| targets:470   CUGGGGGCACCGGACUGUCCGGUG   493 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-||*||||||||*|||||||| targets:719   CCGGUGUACACCGGACUGUCCGGUG   743 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
BT069634.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   |=|||*|||||||||*|||||||| targets:470   CUGGGGGCACCGGACUGUCCGGUG   493 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
BT069634.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-||*||||||||*|||||||| targets:719   CCGGUGUACACCGGACUGUCCGGUG   743 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   GGC---CCACGUGGCCUGUCAGGCCAC   1   =||---||*|||||||||||||||||| targets:471   UCGCAUGGCGCACCGGACAGUCCGGUG   497 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   GGCCCAC---GUGGCCUGUCAGGCCAC   1   ||||-||---||||||||||||||||| targets:796   CCGG-UGGCACACCGGACAGUCCGGUG   821 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   GGC--CCACGUGGCCUGUCAGGCCAC   1   |||--||**||||||||||||||||| targets:694   CCGCUGGCACACCGGACAGUCCGGUG   719 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   GGC--CCACGUGGCCUGUCAGGCCAC   1   |||--||**||||||||||||||||| targets:704   CCGUUGGCUCACCGGACAGUCCGGUG   729 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   GGC---CCACGUGGCCUGUCAGGCCAC   1   =||---||*|||||||||||||||||| targets:2536   UCGACUGGCGCACCGGACAGUCCGGUG   2562 Target Full Sequence	1.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
NM_001349964.1	ncRNA:24   GGCCCACG---UGGCCUGUCAGGCCAC   1   ||||-|||---|||||||||||||||| targets:2991   CCGG-UGCGCCACCGGACAGUCCGGUG   3016 Target Full Sequence	3.0	Zea mays uncharacterized LOC100278112 (IDP592), mRNA	NA	coding protein	psRNATarget
EZ109126.1	ncRNA:24   GGC--CCACGUGGCCUGUCAGGCCAC   1   ==|--||*|||||||||||||||||| targets:172   UUGAUGGCGCACCGGACAGUCCGGUG   197 Target Full Sequence	1.0	TSA: Zea mays contig44785, mRNA sequence	NA	coding protein	psRNATarget
EU959991.1	ncRNA:24   GGC--CCACGUGGCCUGUCAGGCCAC   1   |||--||*|||||||||*|||||||| targets:695   CCGAUGGCGCACCGGACUGUCCGGUG   720 Target Full Sequence	2.5	Zea mays clone 221041 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663618.2	ncRNA:24   GGC--CCACGUGGCCUGUCAGGCCAC   1   |||--||*|||||||||*|||||||| targets:781   CCGAUGGCGCACCGGACUGUCCGGUG   806 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103640564 (LOC103640564), mRNA	NA	coding protein	psRNATarget
EZ065990.1	ncRNA:22   CCCACGUGGCCUGUCAGGCCAC   1   *||*|||||||||||||||||| targets:1   UGGCGCACCGGACAGUCCGGUG   22 Target Full Sequence	1.0	TSA: Zea mays contig01624, mRNA sequence	NA	coding protein	psRNATarget
LQ241411.1	ncRNA:22   CC-CACGUGGCCUGU-CAGGCCAC   1   ||-||||||||||||-|||||||| targets:1   GGUGUGCACCGGACAUGUCCGGUG   24 Target Full Sequence	3.0	Sequence 7406 from Patent EP2985353	NA	coding protein	psRNATarget
HI409281.1	ncRNA:22   CC-CACGUGGCCUGU-CAGGCCAC   1   ||-||||||||||||-|||||||| targets:1   GGUGUGCACCGGACAUGUCCGGUG   24 Target Full Sequence	3.0	Sequence 7406 from Patent EP2074227	NA	coding protein	psRNATarget
JB169742.1	ncRNA:22   CC-CACGUGGCCUGU-CAGGCCAC   1   ||-||||||||||||-|||||||| targets:1   GGUGUGCACCGGACAUGUCCGGUG   24 Target Full Sequence	3.0	Sequence 7406 from Patent EP2559767	NA	coding protein	psRNATarget
BT060603.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-|*|||||||||*|||||||| targets:1299   CCGGUGAGCACCGGACUGUCCGGUG   1323 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds	NA	coding protein	psRNATarget
BT060603.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|*|||||||||*|||||||| targets:1543   CCGGUGGCGCACCGGACUGUCCGGUG   1568 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds	NA	coding protein	psRNATarget
JB170471.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-||*||||||||*|||||||| targets:116   CCGGUGUACACCGGACUGUCCGGUG   140 Target Full Sequence	2.5	Sequence 8135 from Patent EP2559767	NA	coding protein	psRNATarget
HI410010.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-||*||||||||*|||||||| targets:116   CCGGUGUACACCGGACUGUCCGGUG   140 Target Full Sequence	2.5	Sequence 8135 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242140.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-||*||||||||*|||||||| targets:116   CCGGUGUACACCGGACUGUCCGGUG   140 Target Full Sequence	2.5	Sequence 8135 from Patent EP2985353	NA	coding protein	psRNATarget
BT018479.1	ncRNA:24   GGCC-CACGUGGCCUGUCAGGCCAC   1   ||||-||*||||||||*|||||||| targets:44   CCGGCGUUCACCGGACUGUCCGGUG   68 Target Full Sequence	2.5	Zea mays clone EL01N0424B06.d mRNA sequence	NA	coding protein	psRNATarget
EZ101438.1	ncRNA:24   GGCCCACGUGGCCUGUCAGGCCAC   1   *=|***|||||*|||||||||||| targets:37   GUGCACGCACCAGACAGUCCGGUG   60 Target Full Sequence	2.5	TSA: Zea mays contig37094, mRNA sequence	NA	coding protein	psRNATarget
EU970212.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|*|||||||||*|||||||| targets:737   CCGGUGGCGCACCGGACUGUCCGGUG   762 Target Full Sequence	2.5	Zea mays clone 342257 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548733.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|*|||||||||*|||||||| targets:2190   CCGGUGGCGCACCGGACUGUCCGGUG   2215 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109944105), mRNA	NA	coding protein	psRNATarget
BT054293.1	ncRNA:24   GGCC--CACGUGGCCUGUCAGGCCAC   1   ||||--|*|||||||||*|||||||| targets:2196   CCGGUGGCGCACCGGACUGUCCGGUG   2221 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0218B09 mRNA, complete cds	NA	coding protein	psRNATarget