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BaseInfo

ncRNA ID novel_zma_miR9081
Species Zea mays
Class miRNA
Genome position Chr1:14323038-14323192 [+]
Reference genome RefGen_v4
Source SRR4237222;SRR5100255;SRR5105959
Length 24
Mature sequence(if miRNA) 1 - AAACAAUCUGAUCCAUUAGAUCGU - 24
Stem-loop(if miRNA) --    A                CG                C  A    ACACUUAAACCCUUCCACCACCAGCUCAA
  AAAC AUCUGAUCCAUUAGAU  UGAUCCAACCGUAGGU AC UUUA                             U
  |||| ||||||||||||||||  |||||||||||||||| || ||||                             A
  UUUG UAGACUAGGUAAUCUA  GCUAGGUUGGUGUCUA UG UUGG                             A
CG    G                AU                -  -    UAUCAAACAGUCUCCAAAAAAAUAUUUCU
Stem-loop sequence AAACAAUCUGAUCCAUUAGAUCGUGAUCCAACCGUAGGUCACAUUUAACACUUAAACCCUUCCACCACCAGCUCAAUAAUCUUUAUAAAAAAACCUCUGACAAACUAUGGUUGUAUCUGUGGUUGGAUCGUAAUCUAAUGGAUCAGAUGGUUUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163856.1
ncRNA:24   UGCUAGAUUACCUAGUCUAACAAA   1
  |||||||||||||||||||*||||
targets:164   ACGAUCUAAUGGAUCAGAUGGUUU   187

1.5 Sequence 1520 from Patent EP2559767 NA coding protein psRNATarget
HI403395.1
ncRNA:24   UGCUAGAUUACCUAGUCUAACAAA   1
  |||||||||||||||||||*||||
targets:164   ACGAUCUAAUGGAUCAGAUGGUUU   187

1.5 Sequence 1520 from Patent EP2074227 NA coding protein psRNATarget
LQ235525.1
ncRNA:24   UGCUAGAUUACCUAGUCUAACAAA   1
  |||||||||||||||||||*||||
targets:164   ACGAUCUAAUGGAUCAGAUGGUUU   187

1.5 Sequence 1520 from Patent EP2985353 NA coding protein psRNATarget
XM_020538741.1
ncRNA:24   UGCUAGAUUACCUAGUCUAACAAA   1
  |||||||||||||||||||*||||
targets:965   ACGAUCUAAUGGAUCAGAUGGUUU   988

1.5 PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008648194.2
ncRNA:24   UGCUAGAUUACCUAGUCUAACAAA   1
  |||||||||||||||||||*||||
targets:965   ACGAUCUAAUGGAUCAGAUGGUUU   988

1.5 PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235228.1
ncRNA:24   UGCUAGAUUACCUAGUCUAACAAA   1
  ||*||||||||||||||||*||||
targets:140   ACAAUCUAAUGGAUCAGAUGGUUU   163

1.5 Sequence 1223 from Patent EP2985353 NA coding protein psRNATarget
JB163559.1
ncRNA:24   UGCUAGAUUACCUAGUCUAACAAA   1
  ||*||||||||||||||||*||||
targets:140   ACAAUCUAAUGGAUCAGAUGGUUU   163

1.5 Sequence 1223 from Patent EP2559767 NA coding protein psRNATarget
HI403098.1
ncRNA:24   UGCUAGAUUACCUAGUCUAACAAA   1
  ||*||||||||||||||||*||||
targets:140   ACAAUCUAAUGGAUCAGAUGGUUU   163

1.5 Sequence 1223 from Patent EP2074227 NA coding protein psRNATarget
XM_008679933.2
ncRNA:24   UGCUAGAUUACCUAGUCUAACAAA   1
  |||||*|||||||||||||*||||
targets:1790   ACGAUAUAAUGGAUCAGAUGGUUU   1813

2.5 PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008664646.2
ncRNA:24   UGC--UAGAUUACCUAGUCUAACAAA   1
  *||--||||||||||||||||*||||
targets:365   UCGUAAUCUAAUGGAUCAGAUGGUUU   390

1.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008664645.2
ncRNA:24   UGC--UAGAUUACCUAGUCUAACAAA   1
  *||--||||||||||||||||*||||
targets:365   UCGUAAUCUAAUGGAUCAGAUGGUUU   390

1.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008664644.2
ncRNA:24   UGC--UAGAUUACCUAGUCUAACAAA   1
  *||--||||||||||||||||*||||
targets:365   UCGUAAUCUAAUGGAUCAGAUGGUUU   390

1.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X2, mRNA NA coding protein psRNATarget
LQ235229.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAACAAA   1
  *||--||=|||||||||||||*||||
targets:168   UCGUAAUUUAAUGGAUCAGAUGGUUU   193

2.5 Sequence 1224 from Patent EP2985353 NA coding protein psRNATarget
JB163560.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAACAAA   1
  *||--||=|||||||||||||*||||
targets:168   UCGUAAUUUAAUGGAUCAGAUGGUUU   193

2.5 Sequence 1224 from Patent EP2559767 NA coding protein psRNATarget
HI403099.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAACAAA   1
  *||--||=|||||||||||||*||||
targets:168   UCGUAAUUUAAUGGAUCAGAUGGUUU   193

2.5 Sequence 1224 from Patent EP2074227 NA coding protein psRNATarget
HI403426.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAACAAA   1
  *||--||*|||||||||||||*||||
targets:161   UCGUAAUAUAAUGGAUCAGAUGGUUU   186

2.5 Sequence 1551 from Patent EP2074227 NA coding protein psRNATarget
LQ235556.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAACAAA   1
  *||--||*|||||||||||||*||||
targets:161   UCGUAAUAUAAUGGAUCAGAUGGUUU   186

2.5 Sequence 1551 from Patent EP2985353 NA coding protein psRNATarget
JB163887.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAACAAA   1
  *||--||*|||||||||||||*||||
targets:161   UCGUAAUAUAAUGGAUCAGAUGGUUU   186

2.5 Sequence 1551 from Patent EP2559767 NA coding protein psRNATarget
HI403456.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAACAAA   1
  *||--|||||||*||||||||*||||
targets:163   UCGUAAUCUAAUAGAUCAGAUAGUUU   188

2.5 Sequence 1581 from Patent EP2074227 NA coding protein psRNATarget
LQ235586.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAACAAA   1
  *||--|||||||*||||||||*||||
targets:163   UCGUAAUCUAAUAGAUCAGAUAGUUU   188

2.5 Sequence 1581 from Patent EP2985353 NA coding protein psRNATarget
JB163917.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAACAAA   1
  *||--|||||||*||||||||*||||
targets:163   UCGUAAUCUAAUAGAUCAGAUAGUUU   188

2.5 Sequence 1581 from Patent EP2559767 NA coding protein psRNATarget
JB163648.1
ncRNA:24   UGCUAGAUUACCUAGUCUAACAAA   1
  *=*|||||*||||||||||*||||
targets:164   UUUAUCUAUUGGAUCAGAUGGUUU   187

2.5 Sequence 1312 from Patent EP2559767 NA coding protein psRNATarget
LQ235317.1
ncRNA:24   UGCUAGAUUACCUAGUCUAACAAA   1
  *=*|||||*||||||||||*||||
targets:164   UUUAUCUAUUGGAUCAGAUGGUUU   187

2.5 Sequence 1312 from Patent EP2985353 NA coding protein psRNATarget
HI403187.1
ncRNA:24   UGCUAGAUUACCUAGUCUAACAAA   1
  *=*|||||*||||||||||*||||
targets:164   UUUAUCUAUUGGAUCAGAUGGUUU   187

2.5 Sequence 1312 from Patent EP2074227 NA coding protein psRNATarget
EU963854.1
ncRNA:24   UGCU-AGAUUACCUAGUCUAACAAA   1
  ||||-||**||*|||||||||||||
targets:838   ACGAAUCGCAUUGAUCAGAUUGUUU   862

3.0 Zea mays clone 273507 serine-type endopeptidase inhibitor mRNA, complete cds NA coding protein psRNATarget
NM_001156121.1
ncRNA:24   UGCU-AGAUUACCUAGUCUAACAAA   1
  ||||-||**||*|||||||||||||
targets:838   ACGAAUCGCAUUGAUCAGAUUGUUU   862

3.0 Zea mays serine-type endopeptidase inhibitor (LOC100283219), mRNA NA coding protein psRNATarget
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