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BaseInfo

ncRNA ID novel_zma_miR9074
Species Zea mays
Class miRNA
Genome position Chr1:168458534-168458751 [+]
Reference genome RefGen_v4
Source SRR4237222
Length 24
Mature sequence(if miRNA) 195 - AACGGGAUUAACCGAACAAUGCCU - 218
Stem-loop(if miRNA) --  C           U    AA    C                            A                         C                         A
  GC UUGUUCGGUUA UCCC  UACC AUGGAUUGGAUGGGAUUGGAAAAAAUUA GAAGAAGUUUGACUUGUUUGGGAUU AAACCCAUCUAAUCCCACUCAAUCC U
  || ||||||||||| ||||  |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
  CG AACAAGCCAAU AGGG  AUGG UGCCUAACUUGCCCUAACCUUUUUUAGU CUUCUUUAAACUGAACAAACCCUAA UUUGGGUGGGUUAGGGUGAGUUAGG A
UC  U           U    CA    A                            A                         A                         U
Stem-loop sequence GCCUUGUUCGGUUAUUCCCAAUACCCAUGGAUUGGAUGGGAUUGGAAAAAAUUAAGAAGAAGUUUGACUUGUUUGGGAUUCAAACCCAUCUAAUCCCACUCAAUCCAUAUGGAUUGAGUGGGAUUGGGUGGGUUUAAAUCCCAAACAAGUCAAAUUUCUUCAUGAUUUUUUCCAAUCCCGUUCAAUCCGUAGGUAACGGGAUUAACCGAACAAUGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ064093.1
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||||*|||||||||||||||||||
targets:100   AGGCCUUGUUCGGUUAAUCCCGUU   123

0.0 TSA: Zea mays contig65216, mRNA sequence NA coding protein psRNATarget
BT086633.1
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||||*|||||||||||||||||||
targets:367   AGGCCUUGUUCGGUUAAUCCCGUU   390

0.0 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
BT063416.1
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||||*|||||||||||||||||||
targets:1992   AGGCCUUGUUCGGUUAAUCCCGUU   2015

0.0 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||||*|||||||||||||||||||
targets:2064   AGGCCUUGUUCGGUUAAUCCCGUU   2087

0.0 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||||*|||||||||||||||||||
targets:2065   AGGCCUUGUUCGGUUAAUCCCGUU   2088

0.0 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||||*|||||||||||||||||||
targets:2193   AGGCCUUGUUCGGUUAAUCCCGUU   2216

0.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||||*|||||||||||||||||||
targets:2200   AGGCCUUGUUCGGUUAAUCCCGUU   2223

0.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549703.1
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||||*|||||||||||||||||||
targets:2260   AGGCCUUGUUCGGUUAAUCCCGUU   2283

0.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
EU962625.1
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||||*|||||||||||||||=|||
targets:519   AGGCCUUGUUCGGUUAAUCCUGUU   542

1.5 Zea mays clone 244290 mRNA sequence NA coding protein psRNATarget
XM_008672285.2
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||||*|||||||||||||||=|||
targets:1056   AGGCUUUGUUCGGUUAAUCCUGUU   1079

1.5 PREDICTED: Zea mays 5-formyltetrahydrofolate cyclo-ligase, mitochondrial (LOC103647771), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008672284.2
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||||*|||||||||||||||=|||
targets:1114   AGGCUUUGUUCGGUUAAUCCUGUU   1137

1.5 PREDICTED: Zea mays 5-formyltetrahydrofolate cyclo-ligase, mitochondrial (LOC103647771), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008671671.2
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||*|*|||||||||||||||||||
targets:1518   AGACCUUGUUCGGUUAAUCCCGUU   1541

0.0 PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008671669.2
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||*|*|||||||||||||||||||
targets:1542   AGACCUUGUUCGGUUAAUCCCGUU   1565

0.0 PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008671670.2
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||*|*|||||||||||||||||||
targets:1589   AGACCUUGUUCGGUUAAUCCCGUU   1612

0.0 PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008671674.2
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  ||*|*|||||||||||||||||||
targets:1674   AGACCUUGUUCGGUUAAUCCCGUU   1697

0.0 PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020542014.1
ncRNA:24   UCCGUAACAAGCCAAUUAGGGCAA   1
  |||=*||||||*||||||||||||
targets:87   AGGUUUUGUUCAGUUAAUCCCGUU   110

1.5 PREDICTED: Zea mays uncharacterized LOC100277104 (LOC100277104), transcript variant X1, mRNA NA coding protein psRNATarget
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