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BaseInfo

ncRNA ID	novel_zma_miR9062
Species	Zea mays
Class	miRNA
Genome position	Chr8:75938348-75938478 [-]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	1 - AUUUGGACUCCCAAACUAGCCCUU - 24
Stem-loop(if miRNA)	--               -   C  A  CG UU                         C U      A   GGGCUAGUUUGGGAG CCA AA AC  G  GGGGUUGGAGGGGUUAAAAUCUUCU C UAUUCA A   ||||||||||||||| ||| || ||  |  ||||||||||||||||||||||||| | ||||||   CCCGAUCAAACCCUC GGU UU UG  C  CCUUAACCUCCUCGAUUUUAGGAGA G AUAAGU A UU               A   -  A  AA -U                         A U      U
Stem-loop sequence	GGGCUAGUUUGGGAGCCACAAAACCGGUUGGGGUUGGAGGGGUUAAAAUCUUCUCCUUAUUCAAAAUUGAAUAUGAAGAGGAUUUUAGCUCCUCCAAUUCCUCAAGUAUUUGGACUCCCAAACUAGCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020550478.1	ncRNA:24   UUCCCGAUCAAACCCUCAGGUUUA   1   |||||||||||||*|||||||||* targets:2077   AAGGGCUAGUUUGAGAGUCCAAAA   2100 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA	NA	coding protein	psRNATarget
NM_001137967.1	ncRNA:24   UUCCCGAUCAAACCCUCAGGUUUA   1   |*||||||||||*||||||||||* targets:1294   AUGGGCUAGUUUUGGAGUCCAAAA   1317 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192771 (AY111680), mRNA	NA	coding protein	psRNATarget
BT034839.1	ncRNA:24   UUCCCGAUCAAACCCUCAGGUUUA   1   |*||||||||||*||||||||||* targets:1294   AUGGGCUAGUUUUGGAGUCCAAAA   1317 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0022H05 mRNA, complete cds	NA	coding protein	psRNATarget
EU960786.1	ncRNA:24   UUCCCGAUCAAACCCUCAGGUUUA   1   |*||||||||||*||||||||||* targets:1207   AUGGGCUAGUUUUGGAGUCCAAAA   1230 Target Full Sequence	2.5	Zea mays clone 228656 mRNA sequence	NA	coding protein	psRNATarget
XM_008683144.2	ncRNA:24   UUCCCGAUCAAACCCUCAGGUUUA   1   |*||||||||||*||||||||||* targets:1264   AUGGGCUAGUUUUGGAGUCCAAAA   1287 Target Full Sequence	2.5	PREDICTED: Zea mays Synaptotagmin-2 (AY111680), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669125.2	ncRNA:24   UUCCCGAUCAAACCCUCAGGUUUA   1   *|||*||||||||*|||||||||| targets:23   CAGGACUAGUUUGAGAGUCCAAAU   46 Target Full Sequence	1.5	PREDICTED: Zea mays Disease resistance protein RPS2 (LOC100216844), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008669124.2	ncRNA:24   UUCCCGAUCAAACCCUCAGGUUUA   1   *|||*||||||||*|||||||||| targets:23   CAGGACUAGUUUGAGAGUCCAAAU   46 Target Full Sequence	1.5	PREDICTED: Zea mays Disease resistance protein RPS2 (LOC100216844), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654952.2	ncRNA:24   UUCCCGAUCAAACCCUCAGGUUUA   1   =||*||||||||*||||||||||* targets:2451   GAGAGCUAGUUUAGGAGUCCAAAA   2474 Target Full Sequence	2.5	PREDICTED: Zea mays cysteine-rich receptor-like protein kinase 10 (LOC103633255), mRNA	NA	coding protein	psRNATarget
EU956908.1	ncRNA:24   UUCCCGAUCAAACCCUCAGGUUUA   1   |**|||||||||||*||||||||* targets:940   ACCGGCUAGUUUGGAAGUCCAAAA   963 Target Full Sequence	2.5	Zea mays clone 1577150 mRNA sequence	NA	coding protein	psRNATarget
BT063389.1	ncRNA:24   UUCC------CGAUCAAACCCUCAGGUUUA   1   =|||------|||||||||||||||*|||* targets:1465   GAGGAUUAAAGCUAGUUUGGGAGUCAAAAA   1494 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0059C06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008651564.2	ncRNA:24   UUCCCGAUCAAACCCUCAGGUUUA   1   *****||=||||||||*||||||| targets:1938   UUUUUCUGGUUUGGGACUCCAAAU   1961 Target Full Sequence	2.5	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 6.3 (LOC103630501), mRNA	NA	coding protein	psRNATarget