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BaseInfo

ncRNA ID novel_zma_miR9059
Species Zea mays
Class miRNA
Genome position Chr8:168998952-168999077 [+]
Reference genome RefGen_v4
Source SRR4237222;SRR4237226;SRR4237227
Length 24
Mature sequence(if miRNA) 103 - AUCCGACACAAAUGAACAAGGCCU - 126
Stem-loop(if miRNA) --             ACA  A    --ACACC      C     -    AAUCAAA    --A  U
  GCCUUGUUCGUUU   UC GAUU       CGGAAU GUUCC AGCU       GUUU   UA A
  |||||||||||||   || ||||       |||||| ||||| ||||       ||||   || A
  CGGAACAAGUAAA   AG CUAA       GCCUUG UAAGG UCGG       CGAA   AU A
UC             CAC  C    CUACCCA      C     A    --CCUAA    GAG  U
Stem-loop sequence GCCUUGUUCGUUUACAUCAGAUUACACCCGGAAUCGUUCCAGCUAAUCAAAGUUUAUAUAAAUUAGAGAAGCAAUCCGGCUAGGAAUCGUUCCGACCCAUCAAUCCGACACAAAUGAACAAGGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166422.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:9   AGGCCUUGUUCGUUUGUGUCGGAU   32

1.5 Sequence 4086 from Patent EP2559767 NA coding protein psRNATarget
LQ238091.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:9   AGGCCUUGUUCGUUUGUGUCGGAU   32

1.5 Sequence 4086 from Patent EP2985353 NA coding protein psRNATarget
HI405961.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:9   AGGCCUUGUUCGUUUGUGUCGGAU   32

1.5 Sequence 4086 from Patent EP2074227 NA coding protein psRNATarget
JB166392.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

1.5 Sequence 4056 from Patent EP2559767 NA coding protein psRNATarget
HI405928.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

1.5 Sequence 4053 from Patent EP2074227 NA coding protein psRNATarget
LQ238061.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

1.5 Sequence 4056 from Patent EP2985353 NA coding protein psRNATarget
HI405934.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

1.5 Sequence 4059 from Patent EP2074227 NA coding protein psRNATarget
JB166395.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

1.5 Sequence 4059 from Patent EP2559767 NA coding protein psRNATarget
HI405931.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

1.5 Sequence 4056 from Patent EP2074227 NA coding protein psRNATarget
JB166389.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

1.5 Sequence 4053 from Patent EP2559767 NA coding protein psRNATarget
LQ238058.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

1.5 Sequence 4053 from Patent EP2985353 NA coding protein psRNATarget
LQ238064.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

1.5 Sequence 4059 from Patent EP2985353 NA coding protein psRNATarget
HI405914.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4039 from Patent EP2074227 NA coding protein psRNATarget
HI405910.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4035 from Patent EP2074227 NA coding protein psRNATarget
LQ238040.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4035 from Patent EP2985353 NA coding protein psRNATarget
JB166367.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4031 from Patent EP2559767 NA coding protein psRNATarget
JB166371.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4035 from Patent EP2559767 NA coding protein psRNATarget
JB166375.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4039 from Patent EP2559767 NA coding protein psRNATarget
HI405906.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4031 from Patent EP2074227 NA coding protein psRNATarget
JB166366.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4030 from Patent EP2559767 NA coding protein psRNATarget
JB166368.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4032 from Patent EP2559767 NA coding protein psRNATarget
HI405905.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4030 from Patent EP2074227 NA coding protein psRNATarget
LQ238037.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4032 from Patent EP2985353 NA coding protein psRNATarget
LQ238044.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4039 from Patent EP2985353 NA coding protein psRNATarget
HI405907.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4032 from Patent EP2074227 NA coding protein psRNATarget
LQ238036.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4031 from Patent EP2985353 NA coding protein psRNATarget
LQ238035.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

1.5 Sequence 4030 from Patent EP2985353 NA coding protein psRNATarget
EZ056395.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:34   AGGCCUUGUUCGUUUGUGUCGGAU   57

1.5 TSA: Zea mays contig57517, mRNA sequence NA coding protein psRNATarget
AY105834.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:755   AGGCCUUGUUCGUUUGUGUCGGAU   778

1.5 Zea mays PCO093864 mRNA sequence NA coding protein psRNATarget
XM_008673797.2
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:837   AGGCCUUGUUCGUUUGUGUCGGAU   860

1.5 PREDICTED: Zea mays uncharacterized LOC100278465 (LOC100278465), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001111367.2
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:1093   AGGCCUUGUUCGUUUGUGUCGGAU   1116

1.5 Zea mays Ferredoxin-6, chloroplastic (pco072676(750)), mRNA NA coding protein psRNATarget
BT019200.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:941   AGGCCUUGUUCGUUUGUGUCGGAU   964

1.5 Zea mays clone Contig873.F mRNA sequence NA coding protein psRNATarget
NM_001196885.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:1187   AGGCCUUGUUCGUUUGUGUCGGAU   1210

1.5 Zea mays Protein kinase superfamily protein (LOC100502407), mRNA NA coding protein psRNATarget
BT088026.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:1187   AGGCCUUGUUCGUUUGUGUCGGAU   1210

1.5 Zea mays full-length cDNA clone ZM_BFb0366I22 mRNA, complete cds NA coding protein psRNATarget
BT068430.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:453   AGGCCUUGUUCGUUUGUGUCGGAU   476

1.5 Zea mays full-length cDNA clone ZM_BFb0175H08 mRNA, complete cds NA coding protein psRNATarget
XM_008647453.2
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:3270   AGGCCUUGUUCGUUUGUGUCGGAU   3293

1.5 PREDICTED: Zea mays uncharacterized LOC103627145 (LOC103627145), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008647452.2
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:3258   AGGCCUUGUUCGUUUGUGUCGGAU   3281

1.5 PREDICTED: Zea mays uncharacterized LOC103627145 (LOC103627145), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539404.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:3425   AGGCCUUGUUCGUUUGUGUCGGAU   3448

1.5 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020539406.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:3443   AGGCCUUGUUCGUUUGUGUCGGAU   3466

1.5 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020539386.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:3460   AGGCCUUGUUCGUUUGUGUCGGAU   3483

1.5 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539392.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:3478   AGGCCUUGUUCGUUUGUGUCGGAU   3501

1.5 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020539417.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:3728   AGGCCUUGUUCGUUUGUGUCGGAU   3751

1.5 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020538731.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||||||||||=||||||||||||
targets:5238   AGGCCUUGUUCGUUUGUGUCGGAU   5261

1.5 PREDICTED: Zea mays UDP-glucose:glycoprotein glucosyltransferase (LOC103627875), mRNA NA coding protein psRNATarget
EZ517098.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||=|||||||=||||||||||||
targets:97   AGGUCUUGUUCGUUUGUGUCGGAU   120

1.5 TSA: Zea mays cultivar W22 CL501Contig1.betc, mRNA sequence NA coding protein psRNATarget
BT041125.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||=|||||||=||||||||||||
targets:1261   AGGUCUUGUUCGUUUGUGUCGGAU   1284

1.5 Zea mays full-length cDNA clone ZM_BFc0177J19 mRNA, complete cds NA coding protein psRNATarget
LQ238000.1
ncRNA:23   CCGGAACAAGUAAACACAGCCUA   1
  ||||||||||=||||||||||||
targets:1   GGCCUUGUUCGUUUGUGUCGGAU   23

1.5 Sequence 3995 from Patent EP2985353 NA coding protein psRNATarget
JB166331.1
ncRNA:23   CCGGAACAAGUAAACACAGCCUA   1
  ||||||||||=||||||||||||
targets:1   GGCCUUGUUCGUUUGUGUCGGAU   23

1.5 Sequence 3995 from Patent EP2559767 NA coding protein psRNATarget
HI405870.1
ncRNA:23   CCGGAACAAGUAAACACAGCCUA   1
  ||||||||||=||||||||||||
targets:1   GGCCUUGUUCGUUUGUGUCGGAU   23

1.5 Sequence 3995 from Patent EP2074227 NA coding protein psRNATarget
XM_008676360.2
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||*|||||||=||||||||||||
targets:1821   AGGGCUUGUUCGUUUGUGUCGGAU   1844

1.5 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676377.2
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||*|||||||=||||||||||||
targets:1895   AGGGCUUGUUCGUUUGUGUCGGAU   1918

1.5 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008676366.2
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||*|||||||=||||||||||||
targets:1913   AGGGCUUGUUCGUUUGUGUCGGAU   1936

1.5 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008676374.2
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||*|||||||=||||||||||||
targets:1989   AGGGCUUGUUCGUUUGUGUCGGAU   2012

1.5 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X3, mRNA NA coding protein psRNATarget
BT083852.2
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  =||*|||||||=||||||||||||
targets:353   GGGACUUGUUCGUUUGUGUCGGAU   376

1.5 Zea mays full-length cDNA clone ZM_BFb0047A08 mRNA, complete cds NA coding protein psRNATarget
FJ805752.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||=|||*|||=||||||||||||
targets:1085   AGGUCUUAUUCGUUUGUGUCGGAU   1108

2.5 Zea mays DRE-binding protein 4 (DBP4) mRNA, complete cds NA coding protein psRNATarget
NM_001177010.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |||=|||*|||=||||||||||||
targets:1085   AGGUCUUAUUCGUUUGUGUCGGAU   1108

2.5 Zea mays DRE-binding protein 4 (DBP4), mRNA NA coding protein psRNATarget
XM_020547654.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  ||*|=||||||=||||||||||||
targets:4339   AGACUUUGUUCGUUUGUGUCGGAU   4362

1.5 PREDICTED: Zea mays uncharacterized LOC100279517 (LOC100279517), transcript variant X1, mRNA NA coding protein psRNATarget
HI405935.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |**||||||||=||||||||||||
targets:6   AAACCUUGUUCGUUUGUGUCGGAU   29

1.5 Sequence 4060 from Patent EP2074227 NA coding protein psRNATarget
LQ238065.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |**||||||||=||||||||||||
targets:6   AAACCUUGUUCGUUUGUGUCGGAU   29

1.5 Sequence 4060 from Patent EP2985353 NA coding protein psRNATarget
JB166396.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |**||||||||=||||||||||||
targets:6   AAACCUUGUUCGUUUGUGUCGGAU   29

1.5 Sequence 4060 from Patent EP2559767 NA coding protein psRNATarget
NM_001138328.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |**||||||||=||||||||||||
targets:1244   AAACCUUGUUCGUUUGUGUCGGAU   1267

1.5 Zea mays uncharacterized LOC100193173 (LOC100193173), mRNA NA coding protein psRNATarget
BT035367.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |**||||||||=||||||||||||
targets:1244   AAACCUUGUUCGUUUGUGUCGGAU   1267

1.5 Zea mays full-length cDNA clone ZM_BFb0057L05 mRNA, complete cds NA coding protein psRNATarget
EU972216.1
ncRNA:24   UCCGGAACAAGUAAACACAGCCUA   1
  |**||||||||=||||||||||||
targets:1262   AAACCUUGUUCGUUUGUGUCGGAU   1285

1.5 Zea mays clone 377576 mRNA sequence NA coding protein psRNATarget
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