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BaseInfo

ncRNA ID novel_zma_miR9053
Species Zea mays
Class miRNA
Genome position Chr7:10042529-10042578 [+]
Reference genome RefGen_v4
Source SRR4237222
Length 24
Mature sequence(if miRNA) 27 - CACCGGACAGUCCGUUGCACCCAG - 50
Stem-loop(if miRNA) ---  C   C     AC         
   GG GCA CGGAC  UGUCCGGUGC
   || ||| |||||  |||||||||A
   CC CGU GCCUG  ACAGGCCACC
GAC  A   U     --         
Stem-loop sequence GGCGCACCGGACACUGUCCGGUGCACCACCGGACAGUCCGUUGCACCCAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI409360.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||||||||
targets:13   CUGGGUGCACCGGACUGUCCGGUG   36

1.0 Sequence 7485 from Patent EP2074227 NA coding protein psRNATarget
LQ241490.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||||||||
targets:13   CUGGGUGCACCGGACUGUCCGGUG   36

1.0 Sequence 7485 from Patent EP2985353 NA coding protein psRNATarget
JB170392.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||||||||
targets:13   CUGGGUGCACCGGACUGUCCGGUG   36

1.0 Sequence 8056 from Patent EP2559767 NA coding protein psRNATarget
HI409931.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||||||||
targets:13   CUGGGUGCACCGGACUGUCCGGUG   36

1.0 Sequence 8056 from Patent EP2074227 NA coding protein psRNATarget
JB169821.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||||||||
targets:13   CUGGGUGCACCGGACUGUCCGGUG   36

1.0 Sequence 7485 from Patent EP2559767 NA coding protein psRNATarget
LQ242061.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||||||||
targets:13   CUGGGUGCACCGGACUGUCCGGUG   36

1.0 Sequence 8056 from Patent EP2985353 NA coding protein psRNATarget
BT037301.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||||||||
targets:857   CUGGGUGCACCGGACUGUCCGGUG   880

1.0 Zea mays full-length cDNA clone ZM_BFb0161O03 mRNA, complete cds NA coding protein psRNATarget
BT037301.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*||||||||||||||
targets:974   CUGUCCGGUGGUGCACCGGACUGUCCGGUG   1003

1.0 Zea mays full-length cDNA clone ZM_BFb0161O03 mRNA, complete cds NA coding protein psRNATarget
BT019242.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||||||||
targets:634   CUGGGUGCACCGGACUGUCCGGUG   657

1.0 Zea mays clone Contig915.F mRNA sequence NA coding protein psRNATarget
BT019242.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  **|||*|||*||||||||||||||
targets:835   AAGGGGGCACCGGACUGUCCGGUG   858

2.0 Zea mays clone Contig915.F mRNA sequence NA coding protein psRNATarget
NM_001309905.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||||||||
targets:1029   CUGGGUGCACCGGACUGUCCGGUG   1052

1.0 Zea mays uncharacterized LOC100216760 (LOC100216760), mRNA NA coding protein psRNATarget
NM_001309905.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*||||||||||||||
targets:1146   CUGUCCGGUGGUGCACCGGACUGUCCGGUG   1175

1.0 Zea mays uncharacterized LOC100216760 (LOC100216760), mRNA NA coding protein psRNATarget
EU960150.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||||||||
targets:1199   CUGGGUGCACCGGACUGUCCGGUG   1222

1.0 Zea mays clone 222169 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU960150.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*||||||||||||||
targets:1316   CUGUCCGGUGGUGCACCGGACUGUCCGGUG   1345

1.0 Zea mays clone 222169 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU960150.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  **|||*|||*||||||||||||||
targets:1417   AAGGGGGCACCGGACUGUCCGGUG   1440

2.0 Zea mays clone 222169 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU960150.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ***||||||*||||||*|||||||
targets:1533   GAUGGUGCAUCGGACUCUCCGGUG   1556

2.5 Zea mays clone 222169 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT064005.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||||||||
targets:1288   CUGGGUGCACCGGACUGUCCGGUG   1311

1.0 Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds NA coding protein psRNATarget
BT064005.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*||||||||||||||
targets:1405   CUGUCCGGUGGUGCACCGGACUGUCCGGUG   1434

1.0 Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds NA coding protein psRNATarget
BT064005.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  **|||*|||*||||||||||||||
targets:1506   AAGGGGGCACCGGACUGUCCGGUG   1529

2.0 Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds NA coding protein psRNATarget
BT064005.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ***||||||*||||||*|||||||
targets:1622   GAUGGUGCAUCGGACUCUCCGGUG   1645

2.5 Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds NA coding protein psRNATarget
NM_001175099.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||||||||
targets:1288   CUGGGUGCACCGGACUGUCCGGUG   1311

1.0 Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA NA coding protein psRNATarget
NM_001175099.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*||||||||||||||
targets:1405   CUGUCCGGUGGUGCACCGGACUGUCCGGUG   1434

1.0 Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA NA coding protein psRNATarget
NM_001175099.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  **|||*|||*||||||||||||||
targets:1506   AAGGGGGCACCGGACUGUCCGGUG   1529

2.0 Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA NA coding protein psRNATarget
NM_001175099.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ***||||||*||||||*|||||||
targets:1622   GAUGGUGCAUCGGACUCUCCGGUG   1645

2.5 Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA NA coding protein psRNATarget
NM_001176009.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||||||||
targets:2165   CUGGGUGCACCGGACUGUCCGGUG   2188

1.0 Zea mays uncharacterized LOC100383353 (LOC100383353), mRNA NA coding protein psRNATarget
NM_001176009.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*|*||||||||||||
targets:2281   CUGUCCAGUGGUGCACCAGACUGUCCGGUG   2310

2.5 Zea mays uncharacterized LOC100383353 (LOC100383353), mRNA NA coding protein psRNATarget
NM_001176009.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  *****||||*||||||||||||||
targets:2476   AAAUCUGCACCGGACUGUCCGGUG   2499

1.0 Zea mays uncharacterized LOC100383353 (LOC100383353), mRNA NA coding protein psRNATarget
BT066975.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||||||||
targets:2165   CUGGGUGCACCGGACUGUCCGGUG   2188

1.0 Zea mays full-length cDNA clone ZM_BFb0133B08 mRNA, complete cds NA coding protein psRNATarget
BT066975.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*|*||||||||||||
targets:2281   CUGUCCAGUGGUGCACCAGACUGUCCGGUG   2310

2.5 Zea mays full-length cDNA clone ZM_BFb0133B08 mRNA, complete cds NA coding protein psRNATarget
BT066975.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  *****||||*||||||||||||||
targets:2476   AAAUCUGCACCGGACUGUCCGGUG   2499

1.0 Zea mays full-length cDNA clone ZM_BFb0133B08 mRNA, complete cds NA coding protein psRNATarget
HI409878.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||=|||||
targets:17   CUGGGUGCACCGGACUGUUCGGUG   40

2.5 Sequence 8003 from Patent EP2074227 NA coding protein psRNATarget
LQ242008.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||=|||||
targets:17   CUGGGUGCACCGGACUGUUCGGUG   40

2.5 Sequence 8003 from Patent EP2985353 NA coding protein psRNATarget
JB170339.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||=|||||
targets:17   CUGGGUGCACCGGACUGUUCGGUG   40

2.5 Sequence 8003 from Patent EP2559767 NA coding protein psRNATarget
LQ241824.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||=|||||
targets:9   CUGGGUGCACCGGACUGUUCGGUG   32

2.5 Sequence 7819 from Patent EP2985353 NA coding protein psRNATarget
JB170155.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||=|||||
targets:9   CUGGGUGCACCGGACUGUUCGGUG   32

2.5 Sequence 7819 from Patent EP2559767 NA coding protein psRNATarget
HI409694.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*||||||||=|||||
targets:9   CUGGGUGCACCGGACUGUUCGGUG   32

2.5 Sequence 7819 from Patent EP2074227 NA coding protein psRNATarget
EU964336.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  ||||-|||||*||||||||||||||
targets:570   CUGGUGUGCACCGGACUGUCCGGUG   594

1.0 Zea mays clone 278065 mRNA sequence NA coding protein psRNATarget
EU964336.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  **|||*|||*||||||||||||||
targets:455   AAGGGGGCACCGGACUGUCCGGUG   478

2.0 Zea mays clone 278065 mRNA sequence NA coding protein psRNATarget
EU964336.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  =****|*||*||||||||||||||
targets:360   UAAAAUUCACCGGACUGUCCGGUG   383

2.0 Zea mays clone 278065 mRNA sequence NA coding protein psRNATarget
EU943461.1
ncRNA:24   GACC--CACGUUGCCUGACAGGCCAC   1
  ||||--|||||*||||||||||||||
targets:1394   CUGGUGGUGCACCGGACUGUCCGGUG   1419

1.0 Zea mays clone 1624403 mRNA sequence NA coding protein psRNATarget
EU943461.1
ncRNA:24   GAC---CCACGUUGCCUGACAGGCCAC   1
  *||---||*|||*||||||||||||||
targets:1173   AUGCGAGGAGCACCGGACUGUCCGGUG   1199

2.0 Zea mays clone 1624403 mRNA sequence NA coding protein psRNATarget
EU947920.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||||||*|*||||||||||||
targets:196   CUGGGUGCACCAGACUGUCCGGUG   219

2.5 Zea mays clone 366338 mRNA sequence NA coding protein psRNATarget
EU947920.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  *||||*|||*||||||||||||||
targets:394   AUGGGGGCACCGGACUGUCCGGUG   417

2.0 Zea mays clone 366338 mRNA sequence NA coding protein psRNATarget
NM_001176828.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||*|||*||||||||||||||
targets:470   CUGGGGGCACCGGACUGUCCGGUG   493

2.0 Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA NA coding protein psRNATarget
BT069634.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||*|||*||||||||||||||
targets:470   CUGGGGGCACCGGACUGUCCGGUG   493

2.0 Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds NA coding protein psRNATarget
BT036301.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||*|||*||||||||||||||
targets:705   CUGGGAGCACCGGACUGUCCGGUG   728

2.0 Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds NA coding protein psRNATarget
BT036301.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:1001   CCGGUGUGCACCGGACUGUCCGGUG   1025

1.0 Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds NA coding protein psRNATarget
BT036301.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  **|||*|||*||||||||||||||
targets:906   AAGGGGGCACCGGACUGUCCGGUG   929

2.0 Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds NA coding protein psRNATarget
BT054327.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||*|||*||||||||||||||
targets:1132   CUGGGAGCACCGGACUGUCCGGUG   1155

2.0 Zea mays full-length cDNA clone ZM_BFb0334B17 mRNA, complete cds NA coding protein psRNATarget
BT054327.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:1448   CCGGUGUGCACCGGACUGUCCGGUG   1472

1.0 Zea mays full-length cDNA clone ZM_BFb0334B17 mRNA, complete cds NA coding protein psRNATarget
NM_001152486.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  |||||*|||*||||||||||||||
targets:1132   CUGGGAGCACCGGACUGUCCGGUG   1155

2.0 Zea mays hypothetical protein (LOC100279484), mRNA NA coding protein psRNATarget
NM_001152486.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:1448   CCGGUGUGCACCGGACUGUCCGGUG   1472

1.0 Zea mays hypothetical protein (LOC100279484), mRNA NA coding protein psRNATarget
EZ105730.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*||||||||||||||
targets:55   CUGUCCGGUGGUGCACCGGACUGUCCGGUG   84

1.0 TSA: Zea mays contig41388, mRNA sequence NA coding protein psRNATarget
HI409994.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*||||||||||||||
targets:104   CUGUCCGGUGGUGCACCGGACUGUCCGGUG   133

1.0 Sequence 8119 from Patent EP2074227 NA coding protein psRNATarget
LQ242124.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*||||||||||||||
targets:104   CUGUCCGGUGGUGCACCGGACUGUCCGGUG   133

1.0 Sequence 8119 from Patent EP2985353 NA coding protein psRNATarget
JB170455.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*||||||||||||||
targets:104   CUGUCCGGUGGUGCACCGGACUGUCCGGUG   133

1.0 Sequence 8119 from Patent EP2559767 NA coding protein psRNATarget
EZ109324.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*||||||||||||||
targets:29   CUGUCCGGUGGUGCACCGGACUGUCCGGUG   58

1.0 TSA: Zea mays contig44983, mRNA sequence NA coding protein psRNATarget
EZ109324.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  **|||*|||*||||||||||||||
targets:130   AAGGGAGCACCGGACUGUCCGGUG   153

2.0 TSA: Zea mays contig44983, mRNA sequence NA coding protein psRNATarget
EU971710.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:218   CCGGUGUGCACCGGACUGUCCGGUG   242

1.0 Zea mays clone 369445 mRNA sequence NA coding protein psRNATarget
EU971710.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:413   CCGGUGUGCACCGGACUGUCCGGUG   437

1.0 Zea mays clone 369445 mRNA sequence NA coding protein psRNATarget
EU962912.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*||||||||||||||
targets:416   CUGUCCGGUGGUGCACCGGACUGUCCGGUG   445

1.0 Zea mays clone 246496 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EZ071967.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ***||||||*||||||||||||||
targets:49   GGUGGUGCACCGGACUGUCCGGUG   72

1.0 TSA: Zea mays contig07604, mRNA sequence NA coding protein psRNATarget
BT016820.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  **||||*||*||||||||||||||
targets:6   AGGGGUACACCGGACUGUCCGGUG   29

2.0 Zea mays clone Contig653 mRNA sequence NA coding protein psRNATarget
NM_001174416.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  *||||||||*|||||*||||||||
targets:588   AUGGGUGCACCGGACAGUCCGGUG   611

2.5 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
NM_001174416.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ||||-||||*|||||*||||||||
targets:823   CUGG-UGCACCGGACAGUCCGGUG   845

2.5 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
BT061709.2
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  *||||||||*|||||*||||||||
targets:588   AUGGGUGCACCGGACAGUCCGGUG   611

2.5 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
BT061709.2
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ||||-||||*|||||*||||||||
targets:823   CUGG-UGCACCGGACAGUCCGGUG   845

2.5 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
EZ079086.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:50   CCGGUGUGCACCGGACUGUCCGGUG   74

1.0 TSA: Zea mays contig14725, mRNA sequence NA coding protein psRNATarget
EZ049532.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:49   CCGGUGUGCACCGGACUGUCCGGUG   73

1.0 TSA: Zea mays contig50650, mRNA sequence NA coding protein psRNATarget
BT065862.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ***||||||*||||||||||||||
targets:1290   GGUGGUGCACCGGACUGUCCGGUG   1313

1.0 Zea mays full-length cDNA clone ZM_BFc0155J05 mRNA, complete cds NA coding protein psRNATarget
BT065862.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*||||||||||*|||
targets:1073   CUGUCCGAUGGUGCACCGGACUGUCCAGUG   1102

2.5 Zea mays full-length cDNA clone ZM_BFc0155J05 mRNA, complete cds NA coding protein psRNATarget
NM_001175661.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ***||||||*||||||||||||||
targets:1290   GGUGGUGCACCGGACUGUCCGGUG   1313

1.0 Zea mays uncharacterized LOC100382977 (LOC100382977), mRNA NA coding protein psRNATarget
NM_001175661.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*||||||||||*|||
targets:1073   CUGUCCGAUGGUGCACCGGACUGUCCAGUG   1102

2.5 Zea mays uncharacterized LOC100382977 (LOC100382977), mRNA NA coding protein psRNATarget
BT054171.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ***||||||*||||||||||||||
targets:1560   GGUGGUGCACCGGACUGUCCGGUG   1583

1.0 Zea mays full-length cDNA clone ZM_BFb0148C07 mRNA, complete cds NA coding protein psRNATarget
NM_001152406.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ***||||||*||||||||||||||
targets:1560   GGUGGUGCACCGGACUGUCCGGUG   1583

1.0 Zea mays uncharacterized LOC100279393 (LOC100279393), mRNA NA coding protein psRNATarget
EU943181.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ***||||||*||||||||||||||
targets:931   GGUGGUGCACCGGACUGUCCGGUG   954

1.0 Zea mays clone 1580698 mRNA sequence NA coding protein psRNATarget
EU948808.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:767   CCGGUGUGCACCGGACUGUCCGGUG   791

1.0 Zea mays clone 385792 mRNA sequence NA coding protein psRNATarget
EU948808.1
ncRNA:24   GACC----CACGUUGCCUGACAGGCCAC   1
  ||||----|*|||*||||||||||||||
targets:291   CUGGUCUGGCGCACCGGACUGUCCGGUG   318

2.0 Zea mays clone 385792 mRNA sequence NA coding protein psRNATarget
EU964665.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:892   CCGGUGUGCACCGGACUGUCCGGUG   916

1.0 Zea mays clone 280715 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU964665.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:1102   CCGGUGUGCACCGGACUGUCCGGUG   1126

1.0 Zea mays clone 280715 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001176974.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:872   CCGGUGUGCACCGGACUGUCCGGUG   896

1.0 Zea mays uncharacterized LOC100384437 (LOC100384437), mRNA NA coding protein psRNATarget
NM_001176974.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:1082   CCGGUGUGCACCGGACUGUCCGGUG   1106

1.0 Zea mays uncharacterized LOC100384437 (LOC100384437), mRNA NA coding protein psRNATarget
BT070124.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:872   CCGGUGUGCACCGGACUGUCCGGUG   896

1.0 Zea mays full-length cDNA clone ZM_BFc0099M20 mRNA, complete cds NA coding protein psRNATarget
BT070124.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:1082   CCGGUGUGCACCGGACUGUCCGGUG   1106

1.0 Zea mays full-length cDNA clone ZM_BFc0099M20 mRNA, complete cds NA coding protein psRNATarget
NM_001176839.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:1509   CCGGUGUGCACCGGACUGUCCGGUG   1533

1.0 Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA NA coding protein psRNATarget
NM_001176839.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:1753   CCGGUGUGCACCGGACUGUCCGGUG   1777

1.0 Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA NA coding protein psRNATarget
NM_001176839.1
ncRNA:24   GACC----CACGUUGCCUGACAGGCCAC   1
  ||||----|*|||*||||||||||||||
targets:1267   CUGGUCUGGCGCACCGGACUGUCCGGUG   1294

2.0 Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA NA coding protein psRNATarget
BT069667.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:1509   CCGGUGUGCACCGGACUGUCCGGUG   1533

1.0 Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds NA coding protein psRNATarget
BT069667.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*||||||||||||||
targets:1753   CCGGUGUGCACCGGACUGUCCGGUG   1777

1.0 Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds NA coding protein psRNATarget
BT069667.1
ncRNA:24   GACC----CACGUUGCCUGACAGGCCAC   1
  ||||----|*|||*||||||||||||||
targets:1267   CUGGUCUGGCGCACCGGACUGUCCGGUG   1294

2.0 Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds NA coding protein psRNATarget
EZ091678.1
ncRNA:24   GACC----CACGUUGCCUGACAGGCCAC   1
  ||||----|*|||*||||||||||||||
targets:7   CUGGUCUGGCGCACCGGACUGUCCGGUG   34

2.0 TSA: Zea mays contig27327, mRNA sequence NA coding protein psRNATarget
EZ088459.1
ncRNA:24   GACC----CACGUUGCCUGACAGGCCAC   1
  ||||----|*|||*||||||||||||||
targets:79   CUGGUCUGGCGCACCGGACUGUCCGGUG   106

2.0 TSA: Zea mays contig24105, mRNA sequence NA coding protein psRNATarget
EU970212.1
ncRNA:24   GACC----CACGUUGCCUGACAGGCCAC   1
  ||||----|*|||*||||||||||||||
targets:396   CUGGUCUGGCGCACCGGACUGUCCGGUG   423

2.0 Zea mays clone 342257 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU970212.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  =****|*||*||||||||||||||
targets:480   UAUAAUUCACCGGACUGUCCGGUG   503

2.0 Zea mays clone 342257 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  =*|||||||*|||||*||||||||
targets:585   UCGGGUGCACCGGACAGUCCGGUG   608

2.5 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  =*|||||||*|||||*||||||||
targets:137   UCGGGUGCACCGGACAGUCCGGUG   160

2.5 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
EU952168.1
ncRNA:24   GACC----CACGUUGCCUGACAGGCCAC   1
  ||||----|*|||*||||||||||||||
targets:298   CUGGUCUGGCGCACCGGACUGUCCGGUG   325

2.0 Zea mays clone 1215356 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
LQ241540.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ||||-||||*|||||*||||||||
targets:93   CUGG-UGCACCGGACAGUCCGGUG   115

2.5 Sequence 7535 from Patent EP2985353 NA coding protein psRNATarget
JB169871.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ||||-||||*|||||*||||||||
targets:93   CUGG-UGCACCGGACAGUCCGGUG   115

2.5 Sequence 7535 from Patent EP2559767 NA coding protein psRNATarget
HI409410.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ||||-||||*|||||*||||||||
targets:93   CUGG-UGCACCGGACAGUCCGGUG   115

2.5 Sequence 7535 from Patent EP2074227 NA coding protein psRNATarget
BT042818.1
ncRNA:24   GACC---CACGUUGCCUGACAGGCCAC   1
  *|||---|*|||*||||||||||||||
targets:828   GUGGCAGGCGCACCGGACUGUCCGGUG   854

2.0 Zea mays full-length cDNA clone ZM_BFc0047A15 mRNA, complete cds NA coding protein psRNATarget
LQ242243.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*|||||*||||||||
targets:142   CUGUCGAGUGGUGCACCGGACAGUCCGGUG   171

2.5 Sequence 8238 from Patent EP2985353 NA coding protein psRNATarget
HI410113.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*|||||*||||||||
targets:142   CUGUCGAGUGGUGCACCGGACAGUCCGGUG   171

2.5 Sequence 8238 from Patent EP2074227 NA coding protein psRNATarget
JB170574.1
ncRNA:24   GAC------CCACGUUGCCUGACAGGCCAC   1
  |||------||||||*|||||*||||||||
targets:142   CUGUCGAGUGGUGCACCGGACAGUCCGGUG   171

2.5 Sequence 8238 from Patent EP2559767 NA coding protein psRNATarget
BT069074.2
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ||||-||||*|||||*||||||||
targets:763   CUGG-UGCACCGGACAGUCCGGUG   785

2.5 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
BT086229.2
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ||||-||||*|||||*||||||||
targets:830   CUGG-UGCACCGGACAGUCCGGUG   852

2.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
XM_008663618.2
ncRNA:24   GACC-CAC-GUUGCCUGACAGGCCAC   1
  |*||-|||-||*||||||||||||||
targets:654   CCGGUGUGGCACCGGACUGUCCGGUG   679

3.0 PREDICTED: Zea mays uncharacterized LOC103640564 (LOC103640564), mRNA NA coding protein psRNATarget
XM_008663618.2
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ***||*|||*||||||||||||||
targets:783   GAUGGCGCACCGGACUGUCCGGUG   806

2.0 PREDICTED: Zea mays uncharacterized LOC103640564 (LOC103640564), mRNA NA coding protein psRNATarget
EU959991.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ***||*|||*||||||||||||||
targets:697   GAUGGCGCACCGGACUGUCCGGUG   720

2.0 Zea mays clone 221041 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EZ104068.1
ncRNA:19   ACGUUGCCUGACAGGCCAC   1
  ||||*||||||||||||||
targets:1   UGCACCGGACUGUCCGGUG   19

1.0 TSA: Zea mays contig39725, mRNA sequence NA coding protein psRNATarget
BT038885.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ***||||||*|||||*||||||||
targets:933   AAUGGUGCACCGGACGGUCCGGUG   956

2.5 Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds NA coding protein psRNATarget
EU968231.1
ncRNA:24   GACCCACGUUGCCUGACAGGCCAC   1
  ***||||||*|||||*||||||||
targets:1304   AAUGGUGCACCGGACGGUCCGGUG   1327

2.5 Zea mays clone 317172 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT018479.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-||*||*||||||||||||||
targets:44   CCGGCGUUCACCGGACUGUCCGGUG   68

2.0 Zea mays clone EL01N0424B06.d mRNA sequence NA coding protein psRNATarget
EU950973.1
ncRNA:24   GACC-CACGUUGCCUGACAGGCCAC   1
  |*||-|||||*|||||*||||||||
targets:181   CCGGUGUGCACCGGACAGUCCGGUG   205

2.5 Zea mays clone 677173 mRNA sequence NA coding protein psRNATarget
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