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BaseInfo

ncRNA ID	novel_zma_miR9052
Species	Zea mays
Class	miRNA
Genome position	Chr7:110936506-110936645 [+]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	117 - AUGAGAUAGGAAUAACUGAACAAG - 140
Stem-loop(if miRNA)	--      UU       CA   -               -            -UUUCAAUUCUAA     UCA   UGUUCG  UUGUUCU  AUC CAUGUGGAUUGGGUG GAAUUGGAUGGG             AUAAG   A   ||||||  |||||||  ||| ||||||||||||||| ||||||||||||             |||||   A   ACAAGU  AAUAAGG  UAG GUAUACCUAACCUAU CUUAACCUACCC             UAUUU   A GA      -C       -A   A               A            UAACAUUUUUUAA     UCA
Stem-loop sequence	UGUUCGUUUUGUUCUCAAUCCAUGUGGAUUGGGUGGAAUUGGAUGGGUUUCAAUUCUAAAUAAGUCAAAAACUUUUAUAAUUUUUUACAAUCCCAUCCAAUUCAUAUCCAAUCCAUAUGAGAUAGGAAUAACUGAACAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008678388.2	ncRNA:24   GAACAAGUCAAUAAGGAUAGAGUA   1   |||||||=||||||||||||*||| targets:1743   CUUGUUCGGUUAUUCCUAUCCCAU   1766 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:24   GAACAAGUCAAUAAGGAUAGAGUA   1   |||||||=||||||||||||*||| targets:1727   CUUGUUCGGUUAUUCCUAUCCCAU   1750 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT035508.1	ncRNA:24   GAACAAGUCAAUAAGGAUAGAGUA   1   |||||||=||||||||||||*||| targets:1282   CUUGUUCGGUUAUUCCUAUCCCAU   1305 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0066P20 mRNA, complete cds	NA	coding protein	psRNATarget
EU974225.1	ncRNA:24   GAACAAGUCAAUAAGGAUAGAGUA   1   |||||||=||||||||||||*||| targets:1092   CUUGUUCGGUUAUUCCUAUCCCAU   1115 Target Full Sequence	2.5	Zea mays clone 443257 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT036499.1	ncRNA:24   GAACAAGUCAAUAAGGAUAGAGUA   1   |||||||=||||||||||||*||| targets:957   CUUGUUCGGUUAUUCCUAUCCCAU   980 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0119B07 mRNA, complete cds	NA	coding protein	psRNATarget
BT040160.1	ncRNA:24   GAACAAGUCAAUAAGGAUAGAGUA   1   |||||||=||||||||||||*||| targets:955   CUUGUUCGGUUAUUCCUAUCCCAU   978 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0068H20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138428.2	ncRNA:24   GAACAAGUCAAUAAGGAUAGAGUA   1   |||||||=||||||||||||*||| targets:863   CUUGUUCGGUUAUUCCUAUCCCAU   886 Target Full Sequence	2.5	Zea mays CASP-like protein 12 (LOC100193285), mRNA	NA	coding protein	psRNATarget
XM_020553062.1	ncRNA:24   GAACAAGUCAAUAAGGAUAGAGUA   1   |||||||=||||||||||||*||| targets:812   CUUGUUCGGUUAUUCCUAUCCCAU   835 Target Full Sequence	2.5	PREDICTED: Zea mays CASP-like protein 12 (LOC100193285), transcript variant X1, mRNA	NA	coding protein	psRNATarget