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BaseInfo

ncRNA ID	novel_zma_miR9047
Species	Zea mays
Class	miRNA
Genome position	Chr10:149809025-149809111 [-]
Reference genome	RefGen_v4
Source	SRR4237222
Length	21
Mature sequence(if miRNA)	67 - UAACUGUGUCACACUUUGCCU - 87
Stem-loop(if miRNA)	--     G          U    ----GA   UAGUCAUACGAAUU   UAACU UGUCACACUU GCCU      GGU              G   ||||| |||||||||| ||||      |||              A   AUUGA ACGGUGUGAA CGGA      AGA              A CG     -          -    GUGAAA   CGAAUUCUAUCAAG
Stem-loop sequence	UAACUGUGUCACACUUUGCCUGAGGUUAGUCAUACGAAUUGAAGAACUAUCUUAAGCAGAAAAGUGAGGCAAGUGUGGCAAGUUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163853.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   ||||||||||||=|||||||| targets:89   AGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
JB163747.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   ||||||||||||=|||||||| targets:89   AGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
JB163829.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   ||||||||||||=|||||||| targets:89   AGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   ||||||||||||=|||||||| targets:89   AGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
HI403368.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   ||||||||||||=|||||||| targets:89   AGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
HI403392.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   ||||||||||||=|||||||| targets:89   AGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
HI403286.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   ||||||||||||=|||||||| targets:89   AGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   ||||||||||||=|||||||| targets:89   AGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   ||||||||||||=|||||||| targets:89   AGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
HI403284.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   |||=||||||||=|||||||| targets:86   AGGUAAAGUGUGGCACAGUUA   106 Target Full Sequence	2.5	Sequence 1409 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235414.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   |||=||||||||=|||||||| targets:86   AGGUAAAGUGUGGCACAGUUA   106 Target Full Sequence	2.5	Sequence 1409 from Patent EP2985353	NA	coding protein	psRNATarget
JB163745.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   |||=||||||||=|||||||| targets:86   AGGUAAAGUGUGGCACAGUUA   106 Target Full Sequence	2.5	Sequence 1409 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   |||||||||||||||||*||| targets:1567   AGGCAAAGUGUGACACAUUUA   1587 Target Full Sequence	1.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   |||||||||||||||||*||| targets:869   AGGCAAAGUGUGACACAUUUA   889 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008660020.2	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   |||||||||||||||||*||| targets:3209   AGGCAAAGUGUGACACAUUUA   3229 Target Full Sequence	1.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660021.2	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   |||||||||||||||||*||| targets:3337   AGGCAAAGUGUGACACAUUUA   3357 Target Full Sequence	1.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543539.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   |||||||||||||||||*||| targets:3344   AGGCAAAGUGUGACACAUUUA   3364 Target Full Sequence	1.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU945129.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   |*|=||||||||||||||||| targets:618   AUGUAAAGUGUGACACAGUUA   638 Target Full Sequence	1.0	Zea mays clone 241976 mRNA sequence	NA	coding protein	psRNATarget
BT062066.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   |||=|||||||||||||*||| targets:1594   AGGUAAAGUGUGACACAUUUA   1614 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0211I24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663861.2	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   ||*|||||||||=|||||||| targets:2476   AGCCAAAGUGUGGCACAGUUA   2496 Target Full Sequence	2.5	PREDICTED: Zea mays Sister chromatid cohesion 1 protein 3 (LOC100304299), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661761.2	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   |*|=||||||||||||||||| targets:3666   AUGUAAAGUGUGACACAGUUA   3686 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103638977 (LOC103638977), mRNA	NA	coding protein	psRNATarget
EU960142.1	ncRNA:21   UCCGUUUCACACUGUGUCAAU   1   **|||||||||||||||*||| targets:1157   UAGCAAAGUGUGACACAUUUA   1177 Target Full Sequence	1.5	Zea mays clone 222128 microtubule-associated protein RP/EB family member 3 mRNA, complete cds	NA	coding protein	psRNATarget