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BaseInfo

ncRNA ID novel_zma_miR9046
Species Zea mays
Class miRNA
Genome position Chr7:17488363-17488423 [-]
Reference genome RefGen_v4
Source SRR4237222
Length 23
Mature sequence(if miRNA) 39 - UUGUCAUUAUCAUUUGUGGGCUU - 61
Stem-loop(if miRNA) --     AU   C           U  U  AU
  UUGUC  UAU AUUUGUGGGCU CG UA  A
  |||||  ||| ||||||||||| || ||
  AACAG  AUA UAAACACCUGG GC AU  U
GA     --   U           -  U  CG
Stem-loop sequence UUGUCAUUAUCAUUUGUGGGCUUCGUUAAUAUGCUAUCGGGUCCACAAAUUAUAGACAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY111885.1
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  |||||||||||||||||||||||
targets:194   AAGCCCACAAAUGAUAAUGACAA   216

0.0 Zea mays CL9981_2 mRNA sequence NA coding protein psRNATarget
JB166322.1
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  |||||||||||||||||||=|||
targets:115   AAGCCCACAAAUGAUAAUGGCAA   137

1.5 Sequence 3986 from Patent EP2559767 NA coding protein psRNATarget
HI405861.1
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  |||||||||||||||||||=|||
targets:115   AAGCCCACAAAUGAUAAUGGCAA   137

1.5 Sequence 3986 from Patent EP2074227 NA coding protein psRNATarget
LQ237991.1
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  |||||||||||||||||||=|||
targets:115   AAGCCCACAAAUGAUAAUGGCAA   137

1.5 Sequence 3986 from Patent EP2985353 NA coding protein psRNATarget
BT066458.1
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  |||||||||||||||||||=|||
targets:1229   AAGCCCACAAAUGAUAAUGGCAA   1251

1.5 Zea mays full-length cDNA clone ZM_BFb0008C14 mRNA, complete cds NA coding protein psRNATarget
NM_001175838.1
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  |||||||||||||||||||=|||
targets:1229   AAGCCCACAAAUGAUAAUGGCAA   1251

1.5 Zea mays uncharacterized LOC100383173 (LOC100383173), mRNA NA coding protein psRNATarget
NM_001157573.1
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  |||||||||||||||||||=|||
targets:472   AAGCCCACAAAUGAUAAUGGCAA   494

1.5 Zea mays phytoene synthase (LOC100284678), mRNA NA coding protein psRNATarget
EU969281.1
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  |||||||||||||||||||=|||
targets:472   AAGCCCACAAAUGAUAAUGGCAA   494

1.5 Zea mays clone 327976 phytoene synthase mRNA, complete cds NA coding protein psRNATarget
EU955531.1
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  |||||||||||||||||||=|||
targets:1083   AAGCCCACAAAUGAUAAUGGCAA   1105

1.5 Zea mays clone 1535793 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008656211.2
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  |||||||||||||||||||=|||
targets:1551   AAGCCCACAAAUGAUAAUGGCAA   1573

1.5 PREDICTED: Zea mays uncharacterized LOC100275370 (LOC100275370), mRNA NA coding protein psRNATarget
XM_020553313.1
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  |||||||||||||||||||=|||
targets:1552   AAGCCCACAAAUGAUAAUGGCAA   1574

1.5 PREDICTED: Zea mays protein binding protein (LOC100280948), transcript variant X1, mRNA NA coding protein psRNATarget
EZ097793.1
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  |||||||=|||||||||||=|||
targets:22   AAGCCCAUAAAUGAUAAUGGCAA   44

2.5 TSA: Zea mays contig33448, mRNA sequence NA coding protein psRNATarget
EU975987.1
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  ||||||||||||||||||*||||
targets:694   AAGCCCACAAAUGAUAAUAACAA   716

1.5 Zea mays clone 507723 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020550202.1
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  |||=|=||||||*||||||||||
targets:6   AAGUCUACAAAUCAUAAUGACAA   28

2.5 PREDICTED: Zea mays uncharacterized LOC103650051 (LOC103650051), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550201.1
ncRNA:23   UUCGGGUGUUUACUAUUACUGUU   1
  |||=|=||||||*||||||||||
targets:6   AAGUCUACAAAUCAUAAUGACAA   28

2.5 PREDICTED: Zea mays uncharacterized LOC103650051 (LOC103650051), transcript variant X1, mRNA NA coding protein psRNATarget
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