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BaseInfo

ncRNA ID novel_zma_miR9044
Species Zea mays
Class miRNA
Genome position Chr3:177821807-177821933 [-]
Reference genome RefGen_v4
Source SRR1997865;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - ACCAGACUGUCAGGUGUGCACCGG - 24
Stem-loop(if miRNA) --    UG    A    U   C    ---------    AACG  C   CG     A  -   GG      A
  GGUG  CACC GACA GUC GGUG         AGCC    GU GGC  GGCCA CG GUC  CCGCGC A
  ||||  |||| |||| ||| ||||         ||||    || |||  ||||| || |||  |||||| U
  CCAC  GUGG CUGU CAG CCAC         UCGG    CA CCG  CCGGU GC CAG  GGCGCG C
GG    GU    A    -   A    GGAAGAAGA    ----  A   AG     -  A   --      U
Stem-loop sequence GGUGUGCACCAGACAUGUCCGGUGAGCCAACGGUCGGCCGGGCCAACGGUCGGCCGCGCAAUCUGCGCGGGACACGUGGCCGAGCCAACGGCUAGAAGAAGGCACCAGACUGUCAGGUGUGCACCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU940974.1
ncRNA:24   GGCCACGUGUGGACUGUCAGACCA   1
  ||||||||||||*|||||||||||
targets:2768   CCGGUGCACACCGGACAGUCUGGU   2791

1.5 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget