ncRNA ID | osa-miRf10501-npr |
Species | Oryza sativa |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 20 |
Mature sequence(if miRNA) | NA - AUCCUUUGAAUCAAAGGGCC - NA |
Stem-loop(if miRNA) |
                                      AAAUUUCC      ----  UUGAAUCCUAUGAAAU GAAAGCUUCAAUCCUUUGAAUCAAAGGGCCAAAUAGGA        UAUAGG    AU                U ||||||||||||||||||||||||||||||||||||||        ||||||    ||                C CUUUCGAAGUUAGGAAACUUAGUUUCCCGGUUUAUUUU        AAGGGU    UU                C                                       --------      AAAC  AGUUUCCUAAAUACAU |
Stem-loop sequence | GAAAGCUUCAAUCCUUUGAAUCAAAGGGCCAAAUAGGAAAAUUUCCUAUAGGAUUUGAAUCCUAUGAAAUUCCUACAUAAAUCCUUUGAUUCAAAUGGGAAUUUUAUUUGGCCCUUUGAUUCAAAGGAUUGAAGCUUUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015773244.1 |
|
2.0 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333552 (LOC4333552), mRNA | uncharacterized LOC4333552(LOC4333552) | coding protein | psRNATarget | |||||||||
AK288502.1 |
|
2.5 | Oryza sativa Japonica Group cDNA, clone: J090041D12, full insert sequence | NA | coding protein | psRNATarget | |||||||||
CT837837.1 |
|
2.5 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129N04, full insert sequence | NA | coding protein | psRNATarget | |||||||||
XM_015775044.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group two pore potassium channel a (LOC4334137), transcript variant X3, mRNA | two pore potassium channel a(LOC4334137) | coding protein | psRNATarget | |||||||||
XM_015775042.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group two pore potassium channel a (LOC4334137), transcript variant X1, mRNA | two pore potassium channel a(LOC4334137) | coding protein | psRNATarget |