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BaseInfo

ncRNA ID	novel_zma_miR9038
Species	Zea mays
Class	miRNA
Genome position	Chr7:175153065-175153226 [-]
Reference genome	RefGen_v4
Source	SRR4237222
Length	22
Mature sequence(if miRNA)	141 - UGCGGCUGAACCGGAUGGCAGC - 162
Stem-loop(if miRNA)	--  C        CG A     G                  A                   G    C          ACUA   UG GGCUGAAC  G UGGCA CAUUGGACCAGGGCUUCC CUGGCUAUUGGAAGCCUAG GCUC AAAUAUAUAA    U   || ||||||||  | ||||| |||||||||||||||||| ||||||||||||||||||| |||| ||||||||||   AC CUGACUUG  C ACCGU GUAACCUGGUUCCGAAGG GAUCGAUAACCUUCGGGUC CGAG UUUAUAUAUU    A CC  A        AU C     A                  G                   A    A          AAAU
Stem-loop sequence	UGCGGCUGAACCGGAUGGCAGCAUUGGACCAGGGCUUCCACUGGCUAUUGGAAGCCUAGGGCUCCAAAUAUAUAAACUAUAUAAAUUAUAUAUUUAGAGCACUGGGCUUCCAAUAGCUAGGGGAAGCCUUGGUCCAAUGAUGCCACCUAGUUCAGUCACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544200.1	ncRNA:22   CGACGGUAGGCCAAGUCGGCGU   1   |*||||||||||||=||||||| targets:571   GGUGCCAUCCGGUUUAGCCGCA   592 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109942302 (LOC109942302), mRNA	NA	coding protein	psRNATarget
EU964485.1	ncRNA:22   CGACGGU-AGGCCAAGUCGGCGU   1   ||-||||-||||||||||||||* targets:48   GC-GCCACUCCGGUUCAGCCGCC   69 Target Full Sequence	3.0	Zea mays clone 279238 flap endonuclease 1a mRNA, complete cds	NA	coding protein	psRNATarget
BT086994.1	ncRNA:22   CGACGGUAGGCCAAGUCGGCGU   1   ****||=||||||||||||||* targets:429   CGCACCGUCCGGUUCAGCCGCU   450 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0247O16 mRNA, complete cds	NA	coding protein	psRNATarget
BT086973.1	ncRNA:22   CGACGGUAGGCCAAGUCGGCGU   1   ****||=||||||||||||||* targets:429   CGCACCGUCCGGUUCAGCCGCU   450 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0213K10 mRNA, complete cds	NA	coding protein	psRNATarget