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BaseInfo

ncRNA ID	novel_zma_miR9033
Species	Zea mays
Class	miRNA
Genome position	Chr7:157694705-157694813 [+]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	86 - GUGGAUUGAGCUCAAUACUAGAGU - 109
Stem-loop(if miRNA)	--           UUC        G     A   AGA             A      UUUAGUAUUGA   CAAUCCAU UGUGU GAG   GAUUGGGGUGUAA UUAG   |||||||||||   |||||||| ||||| |||   ||||||||||||| |||U   AGAUCAUAACU   GUUAGGUG AUAUA CUC   CUAACUCCACAUU AAUU UG           CGA        G     A   CAA             G
Stem-loop sequence	UUUAGUAUUGAUUCCAAUCCAUGUGUGUAGAGAGAGAUUGGGGUGUAAAUUAGUUUAAGUUACACCUCAAUCAACCUCAAUAUAGGUGGAUUGAGCUCAAUACUAGAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT019068.1	ncRNA:24   UGAGAUCAUAACUCGAGUUAGGUG   1   |||||||||||||||||||||=|| targets:161   ACUCUAGUAUUGAGCUCAAUCUAC   184 Target Full Sequence	1.5	Zea mays clone Contig631.F mRNA sequence	NA	coding protein	psRNATarget
XM_020543503.1	ncRNA:24   UGAGAUCAUAACUCGAGUUAGGUG   1   |||||||||||||*|||||||||| targets:1808   ACUCUAGUAUUGACCUCAAUCCAC   1831 Target Full Sequence	1.5	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543504.1	ncRNA:24   UGAGAUCAUAACUCGAGUUAGGUG   1   |||||||||||||*|||||||||| targets:1807   ACUCUAGUAUUGACCUCAAUCCAC   1830 Target Full Sequence	1.5	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI407245.1	ncRNA:24   UGAGAUCAUAACUCGAGUUAGGUG   1   |||||||||||||*|||||||||| targets:13   ACUCUAGUAUUGACCUCAAUCCAC   36 Target Full Sequence	1.5	Sequence 5370 from Patent EP2074227	NA	coding protein	psRNATarget
JB167706.1	ncRNA:24   UGAGAUCAUAACUCGAGUUAGGUG   1   |||||||||||||*|||||||||| targets:13   ACUCUAGUAUUGACCUCAAUCCAC   36 Target Full Sequence	1.5	Sequence 5370 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239375.1	ncRNA:24   UGAGAUCAUAACUCGAGUUAGGUG   1   |||||||||||||*|||||||||| targets:13   ACUCUAGUAUUGACCUCAAUCCAC   36 Target Full Sequence	1.5	Sequence 5370 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008646892.2	ncRNA:24   UGAGAUCAUAACUCGAGUUAGGUG   1   |||||||||||||*|||||||||= targets:3305   ACUCUAGUAUUGACCUCAAUCCAU   3328 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008646891.2	ncRNA:24   UGAGAUCAUAACUCGAGUUAGGUG   1   |||||||||||||*|||||||||= targets:3210   ACUCUAGUAUUGACCUCAAUCCAU   3233 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646893.2	ncRNA:24   UGAGAUCAUAACUCGAGUUAGGUG   1   |||||||||||||*|||||||||= targets:3124   ACUCUAGUAUUGACCUCAAUCCAU   3147 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X4, mRNA	NA	coding protein	psRNATarget
JB163781.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1445 from Patent EP2559767	NA	coding protein	psRNATarget
HI403320.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1445 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235451.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1446 from Patent EP2985353	NA	coding protein	psRNATarget
HI403229.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1354 from Patent EP2074227	NA	coding protein	psRNATarget
JB163780.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1444 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235449.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1444 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235450.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1445 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235359.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1354 from Patent EP2985353	NA	coding protein	psRNATarget
HI403321.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1446 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235506.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1501 from Patent EP2985353	NA	coding protein	psRNATarget
JB163837.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1501 from Patent EP2559767	NA	coding protein	psRNATarget
HI403319.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1444 from Patent EP2074227	NA	coding protein	psRNATarget
HI403376.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1501 from Patent EP2074227	NA	coding protein	psRNATarget
JB163690.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1354 from Patent EP2559767	NA	coding protein	psRNATarget
JB163782.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   |||||||||||*|||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1446 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235205.1	ncRNA:21   GAUCAUAACUCGAGUUAGGUG   1   ||||||||||*|||||||||| targets:1   CUAGUAUUGACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1200 from Patent EP2985353	NA	coding protein	psRNATarget
HI403075.1	ncRNA:21   GAUCAUAACUCGAGUUAGGUG   1   ||||||||||*|||||||||| targets:1   CUAGUAUUGACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1200 from Patent EP2074227	NA	coding protein	psRNATarget
JB163536.1	ncRNA:21   GAUCAUAACUCGAGUUAGGUG   1   ||||||||||*|||||||||| targets:1   CUAGUAUUGACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1200 from Patent EP2559767	NA	coding protein	psRNATarget
JB163478.1	ncRNA:21   GAUCAUAACUCGAGUUAGGUG   1   ||||||||||*|||||||||| targets:1   CUAGUAUUGACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1142 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235147.1	ncRNA:21   GAUCAUAACUCGAGUUAGGUG   1   ||||||||||*|||||||||| targets:1   CUAGUAUUGACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1142 from Patent EP2985353	NA	coding protein	psRNATarget
HI403017.1	ncRNA:21   GAUCAUAACUCGAGUUAGGUG   1   ||||||||||*|||||||||| targets:1   CUAGUAUUGACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1142 from Patent EP2074227	NA	coding protein	psRNATarget
HI403263.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   ||||*||||||*|||||||||| targets:1   UCUAAUAUUGACCUCAAUCCAC   22 Target Full Sequence	2.5	Sequence 1388 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235393.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   ||||*||||||*|||||||||| targets:1   UCUAAUAUUGACCUCAAUCCAC   22 Target Full Sequence	2.5	Sequence 1388 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235392.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   ||||*||||||*|||||||||| targets:1   UCUAAUAUUGACCUCAAUCCAC   22 Target Full Sequence	2.5	Sequence 1387 from Patent EP2985353	NA	coding protein	psRNATarget
JB163724.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   ||||*||||||*|||||||||| targets:1   UCUAAUAUUGACCUCAAUCCAC   22 Target Full Sequence	2.5	Sequence 1388 from Patent EP2559767	NA	coding protein	psRNATarget
JB163723.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   ||||*||||||*|||||||||| targets:1   UCUAAUAUUGACCUCAAUCCAC   22 Target Full Sequence	2.5	Sequence 1387 from Patent EP2559767	NA	coding protein	psRNATarget
HI403262.1	ncRNA:22   AGAUCAUAACUCGAGUUAGGUG   1   ||||*||||||*|||||||||| targets:1   UCUAAUAUUGACCUCAAUCCAC   22 Target Full Sequence	2.5	Sequence 1387 from Patent EP2074227	NA	coding protein	psRNATarget
BT085393.1	ncRNA:24   UGAGAUCAUAACUCGAGUUAGGUG   1   ||||-|*||||||*|||||||||| targets:1553   ACUC-AUUAUUGAUCUCAAUCCAC   1575 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0006K23 mRNA, complete cds	NA	coding protein	psRNATarget
JB163411.1	ncRNA:21   GAUCAUAACUCGAGUUAGGUG   1   ||||*|||||*|||||||||| targets:1   CUAGCAUUGACCUCAAUCCAC   21 Target Full Sequence	2.5	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
HI402950.1	ncRNA:21   GAUCAUAACUCGAGUUAGGUG   1   ||||*|||||*|||||||||| targets:1   CUAGCAUUGACCUCAAUCCAC   21 Target Full Sequence	2.5	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:21   GAUCAUAACUCGAGUUAGGUG   1   ||||*|||||*|||||||||| targets:1   CUAGCAUUGACCUCAAUCCAC   21 Target Full Sequence	2.5	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget