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BaseInfo

ncRNA ID	novel_zma_miR9032
Species	Zea mays
Class	miRNA
Genome position	Chr10:149515364-149515443 [+]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	57 - UCUGAGAAUCUGGCUGUGGGAAGA - 80
Stem-loop(if miRNA)	---  U     AA UA      U   UCU     UU    CU    UC CCAUA  C  GUUCUU AGG   GUUUG  UCAG  U    || |||||  |  |||||| |||   |||||  ||||  U    AG GGUGU  G  UAAGAG UCU   CAAAC  AGUC  U AGA  -     CG UC      -   UUU     --    UU
Stem-loop sequence	UCUCCAUAAACUAGUUCUUUAGGUCUGUUUGUUUCAGCUUUUUUCUGACAAACUUUUCUGAGAAUCUGGCUGUGGGAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT087362.1	ncRNA:24   AGAAGGGUGUCGGUCUAAGAGUCU   1   ||||||||||||||||||=||||| targets:1203   UCUUCCCACAGCCAGAUUUUCAGA   1226 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0054C12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177007.2	ncRNA:24   AGAAGGGUGUCGGUCUAAGAGUCU   1   ||||||||||||||||||=||||| targets:2430   UCUUCCCACAGCCAGAUUUUCAGA   2453 Target Full Sequence	1.5	Zea mays calcium dependent protein kinase4 (IDP2562), mRNA	NA	coding protein	psRNATarget
FJ805744.1	ncRNA:24   AGAAGGGUGUCGGUCUAAGAGUCU   1   ||||||||||||||||||=||||| targets:2430   UCUUCCCACAGCCAGAUUUUCAGA   2453 Target Full Sequence	1.5	Zea mays CDPK protein (CK1) mRNA, complete cds	NA	coding protein	psRNATarget
EU963449.1	ncRNA:24   AGAAGGGUGUCGGUCUAAGAGUCU   1   |||*|||||||||||||||||||| targets:727   UCUCCCCACAGCCAGAUUCUCAGA   750 Target Full Sequence	0.0	Zea mays clone 262668 mRNA sequence	NA	coding protein	psRNATarget
XM_020545993.1	ncRNA:24   AGAAGGGUGUCGGUCUAAGAGUCU   1   |||*|||||||||||||||||||| targets:195   UCUCCCCACAGCCAGAUUCUCAGA   218 Target Full Sequence	0.0	PREDICTED: Zea mays short-chain dehydrogenase TIC 32, chloroplastic (LOC103641540), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008664880.2	ncRNA:24   AGAAGGGUGUCGGUCUAAGAGUCU   1   |||*|||||||||||||||||||| targets:445   UCUCCCCACAGCCAGAUUCUCAGA   468 Target Full Sequence	0.0	PREDICTED: Zea mays short-chain dehydrogenase TIC 32, chloroplastic (LOC103641540), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664881.2	ncRNA:24   AGAAGGGUGUCGGUCUAAGAGUCU   1   |||*|||||||||||||||||||| targets:449   UCUCCCCACAGCCAGAUUCUCAGA   472 Target Full Sequence	0.0	PREDICTED: Zea mays short-chain dehydrogenase TIC 32, chloroplastic (LOC103641540), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008677133.2	ncRNA:24   AGAAGGGUGUCGGUCUAAGAGUCU   1   |||*||||||||||||||=||||| targets:2304   UCUCCCCACAGCCAGAUUUUCAGA   2327 Target Full Sequence	1.5	PREDICTED: Zea mays phosphoglucomutase, chloroplastic (LOC103651489), mRNA	NA	coding protein	psRNATarget