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BaseInfo

ncRNA ID novel_zma_miR9030
Species Zea mays
Class miRNA
Genome position Chr10:121378431-121378568 [+]
Reference genome RefGen_v4
Source SRR4237222
Length 23
Mature sequence(if miRNA) 1 - AUCGGACUGUCCGGUAGUGCACC - 23
Stem-loop(if miRNA) --       U       A UG -        AU         --------    G    G ------      UAAAC
  AUCGGAC GUCCGGU G  C ACCGGACA  GUCCGGUGG        UGUA GCUG C      UUCCGA     A
  ||||||| ||||||| |  | ||||||||  |||||||||        |||| |||| |      ||||||
  UGGCCUG CAGGCCA C  G UGGCCUGU  CAGGCUACU        GCAU CGGC G      AGGGCU     G
AG       U       - GU G        --         UAAUAUCA    G    G CUAAAA      CACCG
Stem-loop sequence AUCGGACUGUCCGGUAGUGCACCGGACAAUGUCCGGUGGUGUAGGCUGGCUUCCGAUAAACAGGCCACUCGGGAAAAAUCGGCGGCGUACGACUAUAAUUCAUCGGACUGUCCGGUGGUGCACCGGACUGUCCGGUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT065921.2
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||||
targets:817   GGUGCACCACCGGACAGUCCGAU   839

1.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
NM_001175687.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||||
targets:817   GGUGCACCACCGGACAGUCCGAU   839

1.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
HI409909.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:33   GGUGCACCACCGGACAGUCCGGU   55

2.5 Sequence 8034 from Patent EP2074227 NA coding protein psRNATarget
LQ242039.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:33   GGUGCACCACCGGACAGUCCGGU   55

2.5 Sequence 8034 from Patent EP2985353 NA coding protein psRNATarget
JB170370.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:33   GGUGCACCACCGGACAGUCCGGU   55

2.5 Sequence 8034 from Patent EP2559767 NA coding protein psRNATarget
LQ241168.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:31   GGUGCACCACCGGACAGUCCGGU   53

2.5 Sequence 7163 from Patent EP2985353 NA coding protein psRNATarget
JB170644.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:31   GGUGCACCACCGGACAGUCCGGU   53

2.5 Sequence 8308 from Patent EP2559767 NA coding protein psRNATarget
HI408938.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:31   GGUGCACCACCGGACAGUCCGGU   53

2.5 Sequence 7063 from Patent EP2074227 NA coding protein psRNATarget
LQ241068.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:31   GGUGCACCACCGGACAGUCCGGU   53

2.5 Sequence 7063 from Patent EP2985353 NA coding protein psRNATarget
JB169499.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:31   GGUGCACCACCGGACAGUCCGGU   53

2.5 Sequence 7163 from Patent EP2559767 NA coding protein psRNATarget
HI409038.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:31   GGUGCACCACCGGACAGUCCGGU   53

2.5 Sequence 7163 from Patent EP2074227 NA coding protein psRNATarget
HI410183.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:31   GGUGCACCACCGGACAGUCCGGU   53

2.5 Sequence 8308 from Patent EP2074227 NA coding protein psRNATarget
LQ242313.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:31   GGUGCACCACCGGACAGUCCGGU   53

2.5 Sequence 8308 from Patent EP2985353 NA coding protein psRNATarget
JB169399.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:31   GGUGCACCACCGGACAGUCCGGU   53

2.5 Sequence 7063 from Patent EP2559767 NA coding protein psRNATarget
JB169901.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:31   GGUGCACCACCGGACAGUCCGGU   53

2.5 Sequence 7565 from Patent EP2559767 NA coding protein psRNATarget
LQ241570.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:31   GGUGCACCACCGGACAGUCCGGU   53

2.5 Sequence 7565 from Patent EP2985353 NA coding protein psRNATarget
HI409440.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:31   GGUGCACCACCGGACAGUCCGGU   53

2.5 Sequence 7565 from Patent EP2074227 NA coding protein psRNATarget
BT068112.2
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:725   GGUGCACCACCGGACAGUCCGGU   747

2.5 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT066461.2
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:851   GGUGCACCACCGGACAGUCCGGU   873

2.5 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:801   GGUGCACCACCGGACAGUCCGGU   823

2.5 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:801   GGUGCACCACCGGACAGUCCGGU   823

2.5 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
BT061124.2
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:664   GGUGCACCACCGGACAGUCCGGU   686

2.5 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:664   GGUGCACCACCGGACAGUCCGGU   686

2.5 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
EU940831.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:534   GGUGCACCACCGGACAGUCCGGU   556

2.5 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
XM_020546123.1
ncRNA:23   CCACGUGAUGGCCUGUCAGGCUA   1
  |||||||*|||||||||||||=|
targets:4712   GGUGCACCACCGGACAGUCCGGU   4734

2.5 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
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